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Scomber scombrus – Alignment
1 80 NC_006398 AAAAACCACC GTTGTTATTC AACTACAAGA ACCCTAATGG CAAGTCTTCG AAAAACACAC CCACTGCTAA AAATCGCTAA AB120717 AAAAACCACC GTTGTTATTC AACTACAAGA ACCCTAATGG CAAGTCTTCG AAAAACACAC CCACTGCTAA AAATCGCTAA X81564 ATGG CAAGTCTTCG AAAAACACAC CCACTGCTAA AAATCGCTAA L11546 AF032706 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 81 160 NC_006398 CGACGCTCTA GTCGATCTCC CAAGTCCCGC CAACATTTCA GTATGATGAA ACTTCGGTTC CCTGCTTGGT CTCTGTTTAG AB120717 CGACGCTCTA GTCGATCTCC CAAGTCCCGC CAACATTTCA GTATGATGAA ACTTCGGTTC CCTGCTTGGT CTCTGTTTAG X81564 CGACGCTCTA GTCGATCTCC CAAGTCCCGC CAACATTTCA GTATGATGAA ACTTCGGTTC CCTGCTTGGT CTCTGTTTAG L11546 AF032706 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 161 240 NC_006398 CTTCCCAAAT CCTCACAGGA CTATTCCTTG CAATGCACTA CACGCCCGAC GTCGAATCAG CATTCAACTC AGTCGCCCAT AB120717 CTTCCCAAAT CCTCACAGGA CTATTCCTTG CAATGCACTA CACGCCCGAC GTCGAATCAG CATTCAACTC AGTCGCCCAT X81564 CTTCCCAAAT CCTCACAGGA CTATTCCTTG CAATGCACTA CACGCCCGAC GTCGAATCAG CATTCAACTC AGTCGCCCAT L11546 T CCTCACAGGA CTATTCCTTG CAATGCACTA CACGCCCGAC GTCGAATCAG CATTCAACTC AGTCGCCCAT AF032706 Consensus .........t cctcacagga ctattccttg caatgcacta cacgcccgac gtcgaatcag cattcaactc agtcgcccat 241 320 NC_006398 ATTTGCCGGG ACGTAAACTT CGGATGACTC ATCCGCAACA TGCACGCAAA CGGTGCCTCT TTCTTCTTCA TTTGCCTCTA AB120717 ATTTGCCGGG ACGTAAACTT CGGATGACTC ATCCGCAACA TGCACGCAAA CGGTGCCTCT TTCTTCTTCA TTTGCCTCTA X81564 ATTTGCCGGG ACGTAAACTT CGGATGACTC ATCCGCAACA TGCACGCAAA CGGTGCCTCT TTCTTCTTCA TTTGCCTCTA L11546 ATTTGCCGGG ACGTAAACTT CGGATGACTC ATCCGCAACA TGCACGCAAA CGGTGCCTCT TTCTTCTTCA TTTGCCTTTA AF032706 Consensus atttgccggg acgtaaactt cggatgactc atccgcaaca tgcacgcaaa cggtgcctct ttcttcttca tttgcct.ta 321 400 NC_006398 CCTCCACATC GGACGAGGCC TGTACTACGG CTCATACCTT TTTGTAGAGA CATGAAACGT CGGTGTAGTC CTCCTCCTCC AB120717 CCTCCACATC GGACGAGGCC TGTACTACGG CTCATACCTT TTTGTAGAGA CATGAAACGT CGGTGTAGTC CTCCTCCTCC X81564 CCTCCACATC GGACGAGGCC TGTACTACGG CTCATACCTT TTTGTAGAGA CATGAAACGT CGGTGTAGTC CTCCTCCTCC L11546 CCTCCACATC GGACGAGGCC TGTACTACGG CTCATACCTT TTTGTAGAGA CATGAAACGT CGGTGTAGTC CTCCTCCTCC AF032706 TAGAGA CATGAAACGT CGGTGTAGTC CTCCTCCTCC Consensus cctccacatc ggacgaggcc tgtactacgg ctcatacctt tttgTAGAGA CATGAAACGT CGGTGTAGTC CTCCTCCTCC 401 464 NC_006398 TCGTAATGAT GACTGCCTTC GTTGGCTACG TCCTTCCCTG AGGACAAATG TCCTTCTGAG GGGC AB120717 TCGTAATGAT GACTGCCTTC GTTGGCTACG TCCTTCCCTG AGGACAAATG TCCTTCTGAG GGGC X81564 TCGTAATGAT GACTGCCTTC GTTGGCTACG TCCTTCCCTG AGGACAAATG TCCTTCTGAG GGGC L11546 TCGTAATGAT GACTGCCTTC GTTGGCTACG TCCTTCCCTG AGGACAAATG TCCTTCTGAG GAGC AF032706 TCGTAATGAT GACTGCCTTC GTTGGCTACG TCCTTCCCTG AGGACAAATG TCCTTCTGAG GGGC Consensus TCGTAATGAT GACTGCCTTC GTTGGCTACG TCCTTCCCTG AGGACAAATG TCCTTCTGAG GgGC
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890