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Squalus acanthias – Alignment
1 80 NC_002012 AAAAACTATC GTTGTTTATT CAACTACAAG AATAATAATG ACCACTAACA TCCGAAAAAC TCACCCACTT ATCAAAATCG Y18134 AAAAACTATC GTTGTTTATT CAACTACAAG AATAATAATG ACCACTAACA TCCGAAAAAC TCACCCACTT ATCAAAATCG M91184 Consensus aaaaactatc gttgtttatt caactacaag aataataatg accactaaca tccgaaaaac tcacccactt atcaaaatcg 81 160 NC_002012 TTAACCACGC TTTAGTTGAC CTCCCTTCAC CATCTAATAT CTCAATCTGA TGAAATTTTG GATCTTTATT AGGACTCTGC Y18134 TTAACCACGC TTTAGTTGAC CTCCCTTCAC CATCTAATAT CTCAATCTGA TGAAATTTTG GATCTTTATT AGGACTCTGC M91184 TTTTG GATCTTTATT AGGACTCTGC Consensus ttaaccacgc tttagttgac ctcccttcac catctaatat ctcaatctga tgaaaTTTTG GATCTTTATT AGGACTCTGC 161 240 NC_002012 CTGATCATCC AAATTCTTAC AGGATTATTC CTAGCCATGC ATTATACTGC AGACATCTCC ACGGCCTTCT CCTCAGTAGT Y18134 CTGATCATCC AAATTCTTAC AGGATTATTC CTAGCCATGC ATTATACTGC AGACATCTCC ACGGCCTTCT CCTCAGTAGT M91184 CTGATCATCC AAATTCTTAC AGGATTATTC CTAGCCATGC ATTATACTGC AGACATCTCT ACGGCCTTCT CCTCAGTAGT Consensus CTGATCATCC AAATTCTTAC AGGATTATTC CTAGCCATGC ATTATACTGC AGACATCTCc ACGGCCTTCT CCTCAGTAGT 241 320 NC_002012 TCATATTTGT CGTGACGTCA ATTATGGTTG ACTAATTCGT AATATCCACG CTAACGGAGC CTCATTATTT TTCATTTGTG Y18134 TCATATTTGT CGTGACGTCA ATTATGGTTG ACTAATTCGT AATATCCACG CTAACGGAGC CTCATTATTT TTCATTTGTG M91184 TCATATTTGT CGTGACGTCA ATTATGGTTG ACTAATTCGT AATATCCACG CTAACGGAGC CTCATTATTT TTCATTTGTG Consensus TCATATTTGT CGTGACGTCA ATTATGGTTG ACTAATTCGT AATATCCACG CTAACGGAGC CTCATTATTT TTCATTTGTG 321 400 NC_002012 TCTACTTACA TATTGCCCGA GGACTATACT ATGGCTCTTA CCTTTTTAAA GAAGCATGAA ACATCGGAGT CATCTTATTA Y18134 TCTACTTACA TATTGCCCGA GGACTATACT ATGGCTCTTA CCTTTTTAAA GAAGCATGAA ACATCGGAGT CATCTTATTA M91184 TCTACTTACA TATTGCCCGA GGACTATATT ATGGCTCTTA CCTTTTTAAA GAAGCATGAA ACATCGGAGT CATCTTATTA Consensus TCTACTTACA TATTGCCCGA GGACTATAcT ATGGCTCTTA CCTTTTTAAA GAAGCATGAA ACATCGGAGT CATCTTATTA 401 468 NC_002012 TTCTTGCTAA TAGCAACAGC TTTTGTAGGA TATGTCCTAC CATGAGGACA GATATCTTTT TGAGGCGC Y18134 TTCTTGCTAA TAGCAACAGC TTTTGTAGGA TATGTCCTAC CATGAGGACA GATATCTTTT TGAGGCGC M91184 TTCTTGCTAA TAGCAACAGC CTTTGTAGGA TATGTCCTAC CA Consensus TTCTTGCTAA TAGCAACAGC tTTTGTAGGA TATGTCCTAC CAtgaggaca gatatctttt tgaggcgc
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890