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- State: published
Oncorhynchus keta – Alignment
1 80 AB049024 ATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCCAAT AJ314561 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCCAAT AF165078 CAAGA ACCTAATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCCAAT AF125212 ATGGC CAACCTCCGA AAAACCCACC CTCTCCTAAA AATCGCTAAT Consensus .......... .......... .......... .....ATGGC CAACCTCCGA AAAACCCAtC CTCTCCTAAA AATCGCcAAT 81 160 AB049024 GACGCACTAG TCGACCTCCC AGCACCATCT AACATCTCAG TCTGATGAAA CTTTGGTTCA CTCCTGGGCT TATGCCTAGC AJ314561 GACGCACTAG TCGACCTCCC AGCACCATCT AACATCTCAG TCTGATGAAA CTTTGGTTCA CTCCTGGGCT TATGCCTAGC AF165078 GACGCACTAG TCGACCTCCC AGCACCATCT AACATCTCAG TCTGATGAAA CTTTGGTTCA CTCCTGGGCT TATGCCTAGC AF125212 GACGCACTAG TCGACCTCCC AGCACCATCT AACATCTCAG TCTGATGAAA CTTTGGTTCA CTCCTAGGCT TATGCCTAGC Consensus GACGCACTAG TCGACCTCCC AGCACCATCT AACATCTCAG TCTGATGAAA CTTTGGTTCA CTCCTgGGCT TATGCCTAGC 161 240 AB049024 CACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAC ACCTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA AJ314561 CACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAC ACCTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA AF165078 CACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAC ACCTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA AF125212 CACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAC ACCTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA Consensus CACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAC ACCTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA 241 320 AB049024 TCTGCCGAGA TGTCAGCTAC GGCTGACTAA TTCGGAACAT CCACGCTAAC GGAGCATCTT TCTTTTTTAT TTGTATTTAT AJ314561 TCTGCCGAGA TGTCAGCTAC GGCTGACTAA TTCGGAACAT CCACGCTAAC GGAGCATCTT TCTTTTTTAT TTGTATTTAT AF165078 TCTGCCGAGA TGTCAGCTAC GGCTGACTAA TTCGGAACAT CCACGCTAAC GGAGCATCTT TCTTTTTTAT TTGTATTTAT AF125212 TCTGCCGAGA TGTTAGCTAC GGCTGACTAA TTCGAAACAT CCACGCTAAC GGAGCATCTT TCTTTTTTAT TTGTATTTAT Consensus TCTGCCGAGA TGTcAGCTAC GGCTGACTAA TTCGgAACAT CCACGCTAAC GGAGCATCTT TCTTTTTTAT TTGTATTTAT 321 400 AB049024 ATACATATCG CCCGGGGACT TTATTACGGA TCCTACCTGT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT AJ314561 ATACATATCG CCCGGGGACT TTATTACGGA TCCTACCTGT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT AF165078 ATACATATCG CCCGGGGACT TTATTACGGA TCCTACCTGT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT AF125212 ATACATATCG CCCGGGGACT TTATTACGGA TCCTACCTGT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT Consensus ATACATATCG CCCGGGGACT TTATTACGGA TCCTACCTGT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT 401 463 AB049024 CACTATAATA ACTGCATTCG TGGGCTACGT CCTCCCG AJ314561 CACTATAATA ACTGCATTCG TGGGCTACGT CCTCCCGTGA GGACAAAT AF165078 CACTATAATA ACTGCATTCG TGGGCTACGT CCTCCCGTGA GGACAAATAT CCTTTTGAGG AGC AF125212 CACTATAATA ACTGCATTCG TGGGCTACGT CCTCCCGTGA GGACAAATAT CCTTCTGAGG AGC Consensus CACTATAATA ACTGCATTCG TGGGCTACGT CCTCCCGtga ggacaaat.. .......... ...
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890