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- State: published
Rutilus rutilus – Alignment
1 80 AJ555554 ATCCACTA ATAAAAATCG CTAATGACGC GCTAGTCGAC CTTCCGACAC CATCTAACAT AF090772 ATGGCAAGCC TACGAAAAAC CCATCCACTA ATAAAAATCG CTAATGACGC GCTAGTCGAC CTTCCAACAC CATCTAACAT Y10440 ATGGCAAGCC TACGAAAAAC CCATCCACTA ATAAAAATCG CTAATGACGC GCTAGTCGAC CTTCCGACAC CATCTAACAT AJ388439 Consensus .......... .......... ..atccacta ataaaaatcg ctaatgacgc gctagtcgac cttcc.acac catctaacat 81 160 AJ555554 CTCAGCACTA TGAAGCTTCG GGTCCCCGCT AGGGTTATGT TTAATCACCC AAATCCTGAC AGGACTATTC TTAGCTATAC AF090772 CTCAGCACTA TGAAATTTCG GGTCCCTGCT AGGATTATGT TTAATTACCC AAATCCTAAC AGGACTATTC TTAGCCATGC Y10440 CTCAGCACTA TGAAACTTCG GGTCCCTGCT AGGGTTATGT TTAATTACCC AAATCCTGAC AGGACTATTC TTAGCTATAC AJ388439 AACTTCG GTTCCCTGCT AGGGTTATGT TTAATTACCC AAATCCTGAC AGGACTATTC TTATCTATAC Consensus ctcagcacta tgaAacTTCG GgTCCCtGCT AGGgTTATGT TTAATtACCC AAATCCTgAC AGGACTATTC TTAgCtATaC 161 240 AJ555554 ACTATACCTC TGACATCTCA ACCGCGTTTT CATCGGTGAC CCATATCTGC CGAGACGTCA ACTACGGCTG ACTTATCCGA AF090772 ACTACACCTC AGACATCTCA ACCGCATTTT CATCGGTAAC CCACATCTGC CGAGACGTCA ACTACGGCTG ACTTATCCGA Y10440 ACTATACCTC TGACATCTCA ACCGCGTTTT CATCGGTGAC CCACATCTGC CGAGACGTCA ACTACGGCTG ACTTATCCGA AJ388439 ACTATACCTC TTACATCTCA ACCGCTTTTT CATCGGTAAC CCACATCTGC CGAAACTTCA ACTACGGTTG ACTTATCCAA Consensus ACTAtACCTC tgACATCTCA ACCGC.TTTT CATCGGTaAC CCAcATCTGC CGAgACgTCA ACTACGGcTG ACTTATCCgA 241 320 AJ555554 AACCTACATG CTAATGGAGC ATCCTTCTTC TTCATCTGTC TTTATATACA TATCGCACGA GGCCTATACT ACGGGTCATA AF090772 AGCCTACACG CTAACGGAGC ATCCTTCTTC TTCATCTGCC TTTACATACA TATCGCACGA GGCCTATACT ACGGGTCATA Y10440 AACCTACATG CTAATGGAGC ATCCTTCTTC TTCATCTGTC TTTATATACA TATCGCACGA GGCCTATATT ACGGGTCATA AJ388439 AACCTACATG CTAATGGAGC ATCCTTCTTC TTCATCTGTC TTTATATACA TATCGCACAA GGCCTATATT ACGGGTCATA Consensus AaCCTACAtG CTAAtGGAGC ATCCTTCTTC TTCATCTGtC TTTAtATACA TATCGCACgA GGCCTATAtT ACGGGTCATA 321 400 AJ555554 CCTTTATAAG GAAACCTGAA ACATTGGTGT GGTTCTATTC CTCCTGGTTA TAATGACAGC CTTCGTTGGC TACGTACTAC AF090772 TCTTTATAAA GAAACCTGAA ACATTGGTGT CGTTCTATTC CTCCTGGTTA TAATGACAGC CTTCGTTGGC TACGTACTGC Y10440 CCTTTATAAG GAAACCTGAA ACATTGGTGT GGTTCTATTC CTCCTGGTTA AJ388439 CCTTTATAAG GAAACCTGAA ACATTGGTGT GGTTCTATCC CCCCTGGTTA TAATGACAGC CTTCGTTGGC TACTTACTAC Consensus cCTTTATAAg GAAACCTGAA ACATTGGTGT gGTTCTATtC CtCCTGGTTA taatgacagc cttcgttggc tac.tactac 401 428 AJ555554 CATGAGGGCA AATATCCTTC TGAGGCGC AF090772 CATGAGGCCA AATATCCTTC TGAGGTGC Y10440 AJ388439 CATAAGGACA AATATCATTC TGA Consensus cat.agg.ca aatatc.ttc tga.....
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890