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- State: published
Pollachius virens – Alignment
1 80 AJ517490 ATGGCCAGC CTTCGGAAAA CCCATCCAAT CCTAAAAATT GCTAACGACG CACTAGTTGA TCTCCCCACC AF469634 CTTCGGAAAA CCCATCCAAT CCTAAAAATT GCTAATGACG CACTAGTTGA TCTCCCCACC AF081689 ATGGCCAGC CTTCGGAAAA CCCATCCAAT CCTAAAAATT GCTAATGACG CACTAGTTGA TCTCCCCACC AF165082 CAAGAACCTT AATGGCCAGC CTTCGGAAAA CCCATCCAAT CCTAAAAATT GCTAATGACG CACTAGTTGA TCTCCCCACC AY237807 AY237805 AY237806 Consensus ......... .......... .......... .......... .......... .......... .......... 81 160 AJ517490 CCCTCTAATA TCTCAGTATG ATGAAACTTT GGCTCCCTTT TAGGCCTTTG CTTAATTACT CAACTTCTAA CAGGACTATT AF469634 CCCTCTAATA TCTCAGTATG ATGAAACTTT GGCTCCCTTT TAGGCCTTTG CTTAATTACT CAACTTCTAA CAGGACTATT AF081689 CCCTCTAATA TCTCAGTATG ATGAAACTTT GGCTCCCTTT TAGGCCTTTG CTTAATTACT CAACTTCTAA CAGGACTATT AF165082 CCCTCTAATA TCTCAGTATG ATGAAACTTT GGCTCCCTTT TAGGCCTTTG CTTAATTACT CAACTTCTAA CAGGACTATT AY237807 CTTT GGCTCCCTTT TAGGCCTTTG CTTAATTACT CAACTTCTAA CAGGACTATT AY237805 CTTT GGCTCCCTTT TAGGCCTTTG CTTAATTACT CAACTTCTAA CAGGACTATT AY237806 CTTT GGCTCCCTTT TAGGCCTTTG CTTAATTACT CAACTTCTAA CAGGACTATT Consensus .......... .......... ......CTTT GGCTCCCTTT TAGGCCTTTG CTTAATTACT CAACTTCTAA CAGGACTATT 161 240 AJ517490 TCTAGCCATA CACTACACTT CAGACATTGA GACAGCCTTT TCGTCTGTGG TTCATATTTG CCGTGATGTA AATTACGGCT AF469634 TCTAGCCATA CACTACACTT CAGACATTGA GACAGCCTTT TCGTCTGTGG TTCATATTTG CCGTGATGTA AATTACGGCT AF081689 TCTAGCCATA CACTACACTT CAGACATTGA GACAGCCTTT TCGTCTGTGG TTCATATTTG CCGTGATGTA AATTACGGCT AF165082 TCTAGCCATA CACTACACTT CAGACATTGA GACAGCCTTT TCGTCTGTGG TTCATATTTG CCGTGATGTA AATTACGGCT AY237807 TCTAGCCATA CACTACACTT CAGACATTGA GACAGCCTTT TCGTCTGTGG TTCATATTTG CCGTGATGTA AATTACGGCT AY237805 TCTAGCCATA CACTACACTT CAGACATTGA GACAGCCTTT TCGTCTGTGG TTCATATTTG CCGTGATGTA AATTACGGCT AY237806 TCTAGCCATA CACTACACTT CAGACATTGA GACAGCCTTT TCGTCTGTGG TTCATATTTG CCGTGATGTA AATTACGGCT Consensus TCTAGCCATA CACTACACTT CAGACATTGA GACAGCCTTT TCGTCTGTGG TTCATATTTG CCGTGATGTA AATTACGGCT 241 320 AJ517490 GATTAATTCG AAATATGCAC GCCAATGGCG CTTCTTTCTT CTTTATTTGC CTTTATATGC ATATTGCTCG AGGACTTTAT AF469634 GATTAATTCG AAATATGCAC GCCAATGGCG CTTCTTTCTT CTTTATTTGC CTTTATATGC ATATTGCTCG AGGACTTTAT AF081689 GATTAATTCG AAATATGCAC GCCAATGGCG CTTCTTTCTT CTTTATTTGC CTTTATATGC ATATTGCTCG AGGACTTTAT AF165082 GATTAATTCG AAATATGCAC GCCAATGGCG CTTCTTTCTT CTTTATTTGC CTTTATATGC ATATTGCTCG AGGACTTTAT AY237807 GATTAATTCG AAATATGCAC GCCAATGGCG CTTCTTTCTT CTTTATTTGC CTTTATATGC ATATTGCTCG AGGACTTTAT AY237805 GATTAATTCG AAATATGCAC GCCAATGGCG CTTCTTTCTT CTTTATTTGC CTTTATATGC ATATTGCTCG AGGACTTTAT AY237806 GATTAATTCG AAATATGCAC GCCAATGGCG CTTCTTTCTT CTTTATTTGC CTTTATATGC ATATTGCTCG AGGACTTTAT Consensus GATTAATTCG AAATATGCAC GCCAATGGCG CTTCTTTCTT CTTTATTTGC CTTTATATGC ATATTGCTCG AGGACTTTAT 321 400 AJ517490 TACGGCTCTT ATCTCTTTGT AGAAACATGA AATATCGGGG TTGTTCTCTT CCTTTTAGTT ATAATAACCT CTTTCG AF469634 TACGGCTCTT ATCTCTTTGT AGAAACATGA AATATCGGGG TTGTTCTCTT CCTTTTAGTT ATAATAACCT CTTTCGTAGG AF081689 TACGGCTCTT ATCTCTTTGT AGAAACATGA AATATTGGGG TTGTTCTCTT CCTTTTAGTT ATAATAACCT CTTTCGTAGG AF165082 TACGGCTCTT ATCTCTTTGT AGAAACATGA AATATCGGGG TTGTTCTCTT CCTTTTAGTT ATAATAACCT CTTTCGTAGG AY237807 TACGGCTCTT ATCTCTTTGT AGAAACATGA AATATCGGGG TTGTTCTCTT CCTTTTAGTT ATAATAACCT CTTTCGTAGG AY237805 TACGGCTCTT ATCTCTTTGT AGAAACATGA AATATCGGGG TTGTTCTCTT CCTTTTAGTT ATAATAACCT CTTTCGTAGG AY237806 TACGGCTCTT ATCTCTTTGT AGAAACATGA AATATTGGGG TTGTTCTCTT CCTTTTAGTT ATAATAACCT CTTTCGTAGG Consensus TACGGCTCTT ATCTCTTTGT AGAAACATGA AATATcGGGG TTGTTCTCTT CCTTTTAGTT ATAATAACCT CTTTCGtagg 401 439 AJ517490 AF469634 TTACGTTCTC CC AF081689 TTACGTTCTC CC AF165082 TTACGTTCTC CCCTGAGGAC AAATATCATT CTGAGGGGC AY237807 TTACGTTCTC CCC AY237805 TTACGTTCTC CCC AY237806 TTACGTTCTC CCC Consensus ttacgttctc ccc
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890