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Huso huso – Alignment
1 80 NC_005252 AAAAACCACC GTTGTTAATT CAACTATAAA AACCAATGGC AAACATCCGA AAAACACACC CACTACTTAA AATTATTAAT AY442351 AAAAACCACC GTTGTTAATT CAACTATAAA AACCAATGGC AAACATCCGA AAAACACACC CACTACTTAA AATTATTAAT AJ245840 CAATGGC AAACATCCGA AAAACACACC CACTACTTAA AATTATTAAT AF283743 TAAA AAMCAATGGC AAACATCCGA AAAACACACC CAYTACTTAA AATTATTAAT AF283744 TAAA AACCAATGGC AAACATCCGA AAAACACACC CACTACTTAA AATTATTAAT AF283745 TAAA AACCAATGGC AAACATCCGA AAAACACACC CACTACTTAA AATTATTAAT AF308904 AF308907 AF308906 AF308908 AF308905 AF404786 AF006132 Consensus .... .......... .......... .......... .......... .......... 81 160 NC_005252 GGAGCATTTA TTGACCTCCC CACACCCTCC AACATCTCCG TGTGATGAAA TTTTGGCTCA CTCCTAGGCC TCTGCCTTAT AY442351 GGAGCATTTA TTGACCTCCC CACACCCTCC AACATCTCCG TGTGATGAAA TTTTGGCTCA CTCCTAGGCC TCTGCCTTAT AJ245840 GGAGCATTTA TTGACCTCCC CACACCCTCC AACATCTCCG TGTGATGAAA TTTTGGCTCA CTCCTAGGCC TCTGCCTTAT AF283743 GGAGCATTTA TTGACCTCCC CACACCCTCC AACATCTCCG TGTGATGAAA TTTTGGCTCA CTCCTAGGCC TCTGCCTTAT AF283744 GGAGCATTTA TTGACCTCCC CACACCCTCC AACATCTCCG TGTGATGAAA TTTTGGCTCA CTCCTAGGCC TCTGCCTTAT AF283745 GGAGCATTTA TTGACCTCCC CACACCCTCC AACATCTCCG TGTGATGAAA TTTTGGCTCA CTCCTAGGCC TCTGCCTTAT AF308904 CTCCTAGGCC TCTGCCTTAT AF308907 CTCCTAGGCC TCTGCCTTAT AF308906 CTCCTAGGCC TCTGCCTTAT AF308908 CTCCTAGGCC TGTGCCTTAT AF308905 CTCCTAGGCC TCTGCCTTAT AF404786 CTCCTAGGCC TCTGCCTTAT AF006132 CTCCTAGGCC TCTGCCTTAT Consensus .......... .......... .......... .......... .......... .......... CTCCTAGGCC TcTGCCTTAT 161 240 NC_005252 TACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACGGC CTTCTCCTCC GTCGCCCACA AY442351 TACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACGGC CTTCTCCTCC GTCGCCCACA AJ245840 TACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACGGC CTTCTCCTCC GTCGCCCACA AF283743 TACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACGGC CTTCTCCTCC GTCGCCCACA AF283744 TACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACGGC CTTCTCCTCC GTCGCCCACA AF283745 TACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACGGC CTTCTCCTCC GTCGCCCACA AF308904 TACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACGGC CTTCTCCTCC GTCGCCCACA AF308907 TACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACGGC CTTCTCCTCC GTCGCCCACA AF308906 TACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACGGC CTTCTCCTCC GTCGCCCACA AF308908 TACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACGGC CTTCTCCTCC GTCGCCCACA AF308905 TACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACGGC CTTCTCCTCC GTCGCCCACA AF404786 TACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACGGC CTTCTCCTCC GTCGCCCACA AF006132 CACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACAGC CTTCTCCTCC GTCGCCCACA Consensus tACACAAATC TTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TCTCAACgGC CTTCTCCTCC GTCGCCCACA 241 320 NC_005252 TCTGCCGAGA CGTAAATTAT GGATGACTAA TCCGAAATAT TCATGCAAAC GGGGCCTCCT TCTTCTTCAT CTGCTTGTAC AY442351 TCTGCCGAGA CGTAAATTAT GGATGACTAA TCCGAAATAT TCATGCAAAC GGGGCCTCCT TCTTCTTCAT CTGCTTGTAC AJ245840 TCTGCCGAGA CGTAAATTAT GGATGACTTA TCCGAAATAT TCATGCAAAC GGGGCCTCCT TCTTCTTCAT CTGCTTGTAC AF283743 TCTGCCGAGA CGTAAATTAT GGATGACTAA TCCGAAATAT TCATGCAAAC GGGGCCTCCT TCTTCTTCAT CTGCTTGTAC AF283744 TCTGCCGAGA CGTAAATTAT GGATGACTAA TCCGAAATAT TCATGCAAAC GGGGCCTCCT TCTTCTTCAT CTGCTTGTAC AF283745 TCTGCCGAGA CGTAAATTAT GGATGACTAA TCCGAAATAT TCATGCAAAC GGGGCCTCCT TCTTCTTCAT CTGCTTGTAC AF308904 TCTGCCGAGA CGTAAATTAT GGATGACTAA TCCGAAATAT TCATGCAAAC GGGGCCTCCT TCTTCTTCAT CTGCTTGTAC AF308907 TCTGCCGAGA CGTAAATTAT GGATGACTTA TCCGAAATAT TCATGCAAAC GGGGCCTCCT TCTTCTTCAT CTGCTTGTAC AF308906 TCTGCCGAGA CGTAAATTAT GGATGACTAA TCCGAAATAT TCATGCAAAC GGGGCCTCCT TCTTCTTCAT CTGCTTGTAC AF308908 TCTGCCGAGA CGTAAATTAT GGATGACTAA TCCGAAATAT TCATGCAAAC GGGGCCTCCT TCTTCTTCAT CTGCTTGTAC AF308905 TCTGCCGAGA CGTAAATTAT GGATGACTAA TCCAAAATAT TCATGCAAAC GGGGCCTCCT TCTTCTTCAT CTGCTTGTAC AF404786 TCTGCCGAGA CGTAAATTAT GGATGACTAA TCCGAAATAT TCATGCAAAC GGGGCCTCCT TCTTCTTCAT CTGCTTGTAC AF006132 TCTGCCGAGA CGTAAATTAT GGATGACTAA TCCGAAATAT TCATGCAAAC GGGGCCTCCT CCTTCTTCAT CTGCTTGTAT Consensus TCTGCCGAGA CGTAAATTAT GGATGACTaA TCCgAAATAT TCATGCAAAC GGGGCCTCCT tCTTCTTCAT CTGCTTGTAc 321 400 NC_005252 CTTCACGTAG CACGAGGTAT GTATTACGGT TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCCTGCTCCT AY442351 CTTCACGTAG CACGAGGTAT GTATTACGGT TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCCTGCTCCT AJ245840 CTTCACGTAG CACGAGGTAT GTATTACGGT TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCCTGCTCCT AF283743 CTTCACGTAG CACGAGGTAT GTATTACGGT TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCCTGCTCCT AF283744 CTTCACGTAG CACGAGGTAT GTATTACGGT TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCCTGCTCCT AF283745 CTTCACGTAG CACGAGGTAT GTATTACGGT TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCCTGCTCCT AF308904 CTTCACGTAG CACGAGGTAT GTATTACGGT TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCCTGCTCCT AF308907 CTTCACGTAG CACGAGGTAT GTATTACGGT TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCCTGCTCCT AF308906 CTTCACGTAG CACGAGGTAT GTATTACGGT TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTGATCC TCCTGCTCCT AF308908 CTTCACGTAG CACGAGGTAT GTATTACGGT TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCCTGCTCCT AF308905 CTTCACGTAG CACGAGGTAT GTATTACGGN TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCCTGCTCCT AF404786 CTTCACGTAG CACGAGGTAT GTATTACGGT TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTAATT AF006132 CTTCACGTAG CACGAGGTTT GTATTACGGT TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTAT Consensus CTTCACGTAG CACGAGGTaT GTATTACGGt TCATACCTTC AAAAAGAAAC CTGAAACATC GGAGTaatcc tcctgctcct 401 463 NC_005252 TACCATAATA ACCGCCTTCG TAGGATATGT ACTGCCCTGG GGACAAATAT CATTTTGAGG GGC AY442351 TACCATAATA ACCGCCTTCG TAGGATATGT ACTGCCCTGG GGACAAATAT CATTTTGAGG GGC AJ245840 TACCATAATA ACCGCCTTCG TAGGATATGT ACTGCCCTGG GGACAAATAT CATTTTGAGG GGC AF283743 TACCATAATA ACCGCCTTCG TAGGGTATGT ACTGCCC AF283744 TACCATAATA ACCGCCTTCG TAGGGTATGT ACTGCCC AF283745 TACCATAATA ACCGCCTTCG TAGGGTATGT ACTGCCC AF308904 TACCATAATA AF308907 TACCATAATA AF308906 TACCATAATA AF308908 TACCATAATA AF308905 TACCATA AF404786 AF006132 Consensus taccataata .......... .......... .......
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890