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  • State: published

Boreogadus saida – Alignment

 


            1                                                                                    80
  AB091097  ATGGCCAGCC TTCGGAAAAC CCATCCAATC CTAAAAATTG CTAATAGTGC ATTAGTTGAT CTCCCCGCCC CCTCCAATAT
  AF081686  ATGGCCAGCC TTCGGAAAAC CCATCCAATC CTAAAAATTG CTAATAGTGC ATTAGTTGAT CTCCCCGCCC CCTCCAATAT
 Consensus  ATGGCCAGCC TTCGGAAAAC CCATCCAATC CTAAAAATTG CTAATAGTGC ATTAGTTGAT CTCCCCGCCC CCTCCAATAT

            81                                                                                  160
  AB091097  CTCAGTATGA TGAAATTTTG GCTCTCTTCT AGGCCTTTGC TTAATTACTC AGCTTTTAAC AGGATTATTT CTAGCCATAC
  AF081686  CTCAGTATGA TGAAATTTTG GCTCTCTTCT AGGCCTTTGC TTAATTACTC AGCTTTTAAC AGGATTATTT CTAGCCATAC
 Consensus  CTCAGTATGA TGAAATTTTG GCTCTCTTCT AGGCCTTTGC TTAATTACTC AGCTTTTAAC AGGATTATTT CTAGCCATAC

            161                                                                                 240
  AB091097  ACTACACCGC AGATATCGAA ACAGCCTTCT CATCCGTAGT CCACATCTGT CGTGATGTAA ATTATGGCTG ATTAATTCGA
  AF081686  ACTACACCGC AGATATCGAA ACAGCCTTCT CATCCGTAGT CCACATCTGT CGTGATGTAA ATTATGGCTG ATTAATTCGA
 Consensus  ACTACACCGC AGATATCGAA ACAGCCTTCT CATCCGTAGT CCACATCTGT CGTGATGTAA ATTATGGCTG ATTAATTCGA

            241                                                                                 320
  AB091097  AATATACATG CTAATGGTGC CTCTTTCTTT TTTATTTGTC TTTATATACA TATCGCCCGA GGTCTTTATT ACGGCTCTTA
  AF081686  AATATACATG CTAATGGTGC CTCTTTCTTT TTTATTTGTC TTTATATACA CATCGCCCGA GGTCTTTATT ACGGCTCTTA
 Consensus  AATATACATG CTAATGGTGC CTCTTTCTTT TTTATTTGTC TTTATATACA cATCGCCCGA GGTCTTTATT ACGGCTCTTA

            321                                                                                 400
  AB091097  TCTTTTTGTA GAGACATGAA GCATCGGAGT TGTCCTTTTT CTTCTAGTAA TAATAACCTC TTTCGTAGGT TACGTTCTTC
  AF081686  TCTTTTTGTA GAGACATGAA ACATCGGAGT TGTCCTTTTT CTTCTAGTAA TAATAACCTC TTTCGTAGGT TACGTTCTTC
 Consensus  TCTTTTTGTA GAGACATGAA aCATCGGAGT TGTCCTTTTT CTTCTAGTAA TAATAACCTC TTTCGTAGGT TACGTTCTTC

            401                        428
  AB091097  CCTGAGGACA AATATCGTTC TGAGGGGC
  AF081686  C                             
 Consensus  C......... .......... ........

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890