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  • State: published

Engraulis encrasicolus – Alignment

 


            1                                                                                    80
  AF472579  ATGGCAAGCC TACGAAAAAC CCACCCCCTA CTCAAGATCG CTAACGACGC AGTAGTAGAC CTCCCAGCAC CATCCAACAT
  AF459429                                                                                         
  AF459428                                                                                         
  AF259427                                                                                         
  AY394054                                                                                         
 Consensus  .......... .......... .......... .......... .......... .......... .......... ..........

            81                                                                                  160
  AF472579  TTCAGTCTGA TGAAATTTTG GATCCCTTTT AGGACTATGC TTGGCCACAC AAATCCTTAC AGGACTTTTC CTAGCCATAC
  AF459429                                                                                         
  AF459428                                                                                         
  AF259427                                                                                         
  AY394054                                                                                         
 Consensus  .......... .......... .......... .......... .......... .......... .......... ..........

            161                                                                                 240
  AF472579  ACTACACCTC AGACATCGCT ACCGCTTTCT CGTCAGTGGC CCACATTTGT CGAGACGTAA ATTACGGATG ACTAATCCGA
  AF459429                                                         CGTGATGTAA ATTACGGCTG ACTAATCCGA
  AF459428                                                         CGTGATGTAA ATTACGGCTG ACTTATCCGA
  AF259427                                                         CGTGATGTAA ATTACGGCTG ACTTATCCGA
  AY394054                                                                                         
 Consensus  .......... .......... .......... .......... .......... cg.ga.gtaa attacgg.tg act.atccga

            241                                                                                 320
  AF472579  AATATGCATG CAAACGGAGC CTCATTCTTC TTCATCTGCA TCTATGCACA CATTGCTCGA GGACTGTACT ACGGTTCTTA
  AF459429  AATATGCATG CAAACGGAGC CTCATTCTTC TTCATCTGCA TTTATGCACA CATTGCTCGA GGACTGTACT ACGGTTCTTA
  AF459428  AATATGCATG CAAACGGAGC CTCATTCTTT TTTATCTGCA TTTATGCACA CATTGCTCGG GGACTGTACT ACGGTTCTTA
  AF259427  AATATGCATG CAAACGGAGC CTCATTCTTT TTCATCTGCA TTTATGCACA CATTGCTCGG GGACTGTACT ACGGTTCTTA
  AY394054                                                                      ACTGTACT ACGGTTCTTA
 Consensus  aatatgcatg caaacggagc ctcattctt. tt.atctgca t.tatgcaca cattgctcg. ggACTGTACT ACGGTTCTTA

            321                                                                                 400
  AF472579  TCTTTACATA GAAACTTGAA ACATCGGAGT AGTACTACTT CTTTTAGTTA TGATGACTGC CTTCGTTGGG TACGTACTAC
  AF459429  TCTTTACATA GAAACTTGAA ACATCGGAGT AGTACTACTT CTTTTAGTTA TGATGACTGC CTTCGTTGGG TACGTACTAC
  AF459428  TCTTTACATA GAAACTTGGA ACATCGGAGT AGTACTACTT CTTTTAGTTA TGATGACTGC CTTCGTTGGG TACGTACTAC
  AF259427  TCTTTACATA GAAACTTGAA ACATCGGAGT AGTACTACTT CTTTTAGTTA TGATGACTGC CTTCGTTGGG TACGTACTAC
  AY394054  TCTTTACATA GAAACTTGAA ACATCGGAGT GGTACTACTT CTTTTAGTTA TGATGACTGC CTTCGTTGGG TACGTACTAC
 Consensus  TCTTTACATA GAAACTTGaA ACATCGGAGT aGTACTACTT CTTTTAGTTA TGATGACTGC CTTCGTTGGG TACGTACTAC

            401                        428
  AF472579  CCTGAGGACA AATGTCCTTC TGAGGAGC
  AF459429  CCTGAGGACA AATATCATTC TGAGGG  
  AF459428  CCTGAGGACA AATATCATTC TGAGGG  
  AF259427  CCTGAGGACA AATATCATTC TGAGGG  
  AY394054  CCTGA                         
 Consensus  CCTGAggaca aat.tc.ttc tgagg...

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890