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Engraulis encrasicolus – Alignment
1 80 AF472579 ATGGCAAGCC TACGAAAAAC CCACCCCCTA CTCAAGATCG CTAACGACGC AGTAGTAGAC CTCCCAGCAC CATCCAACAT AF459429 AF459428 AF259427 AY394054 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 81 160 AF472579 TTCAGTCTGA TGAAATTTTG GATCCCTTTT AGGACTATGC TTGGCCACAC AAATCCTTAC AGGACTTTTC CTAGCCATAC AF459429 AF459428 AF259427 AY394054 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 161 240 AF472579 ACTACACCTC AGACATCGCT ACCGCTTTCT CGTCAGTGGC CCACATTTGT CGAGACGTAA ATTACGGATG ACTAATCCGA AF459429 CGTGATGTAA ATTACGGCTG ACTAATCCGA AF459428 CGTGATGTAA ATTACGGCTG ACTTATCCGA AF259427 CGTGATGTAA ATTACGGCTG ACTTATCCGA AY394054 Consensus .......... .......... .......... .......... .......... cg.ga.gtaa attacgg.tg act.atccga 241 320 AF472579 AATATGCATG CAAACGGAGC CTCATTCTTC TTCATCTGCA TCTATGCACA CATTGCTCGA GGACTGTACT ACGGTTCTTA AF459429 AATATGCATG CAAACGGAGC CTCATTCTTC TTCATCTGCA TTTATGCACA CATTGCTCGA GGACTGTACT ACGGTTCTTA AF459428 AATATGCATG CAAACGGAGC CTCATTCTTT TTTATCTGCA TTTATGCACA CATTGCTCGG GGACTGTACT ACGGTTCTTA AF259427 AATATGCATG CAAACGGAGC CTCATTCTTT TTCATCTGCA TTTATGCACA CATTGCTCGG GGACTGTACT ACGGTTCTTA AY394054 ACTGTACT ACGGTTCTTA Consensus aatatgcatg caaacggagc ctcattctt. tt.atctgca t.tatgcaca cattgctcg. ggACTGTACT ACGGTTCTTA 321 400 AF472579 TCTTTACATA GAAACTTGAA ACATCGGAGT AGTACTACTT CTTTTAGTTA TGATGACTGC CTTCGTTGGG TACGTACTAC AF459429 TCTTTACATA GAAACTTGAA ACATCGGAGT AGTACTACTT CTTTTAGTTA TGATGACTGC CTTCGTTGGG TACGTACTAC AF459428 TCTTTACATA GAAACTTGGA ACATCGGAGT AGTACTACTT CTTTTAGTTA TGATGACTGC CTTCGTTGGG TACGTACTAC AF259427 TCTTTACATA GAAACTTGAA ACATCGGAGT AGTACTACTT CTTTTAGTTA TGATGACTGC CTTCGTTGGG TACGTACTAC AY394054 TCTTTACATA GAAACTTGAA ACATCGGAGT GGTACTACTT CTTTTAGTTA TGATGACTGC CTTCGTTGGG TACGTACTAC Consensus TCTTTACATA GAAACTTGaA ACATCGGAGT aGTACTACTT CTTTTAGTTA TGATGACTGC CTTCGTTGGG TACGTACTAC 401 428 AF472579 CCTGAGGACA AATGTCCTTC TGAGGAGC AF459429 CCTGAGGACA AATATCATTC TGAGGG AF459428 CCTGAGGACA AATATCATTC TGAGGG AF259427 CCTGAGGACA AATATCATTC TGAGGG AY394054 CCTGA Consensus CCTGAggaca aat.tc.ttc tgagg...
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890