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  • State: published

Oncorhynchus kisutch – Alignment

 


            1                                                                                    80
  AJ314563  AAAAAACCAC CGTTGTTATT CAACTACAAG AACCTAATGG CCAACCTCCG AAAAACCCAT CCTCTCCTAA AAATCGCTAA
  AF165079                              CAAG AACCTAATGG CCAACCTCCG AAAAACCCAT CCTCTCCTAA AAATCGCTAA
 Consensus  .......... .......... ......CAAG AACCTAATGG CCAACCTCCG AAAAACCCAT CCTCTCCTAA AAATCGCTAA

            81                                                                                  160
  AJ314563  TGACGCACTA GTCGACCTCC CAGCACCCTC TAACATCTCA GTCTGATGAA ACTTTGGCTC ACTCCTAGGC CTATGTTTAG
  AF165079  TGACGCACTA GTCGACCTCC CAGCACCCTC TAACATCTCA GTCTGATGAA ACTTTGGCTC ACTCCTAGGC CTATGTTTAG
 Consensus  TGACGCACTA GTCGACCTCC CAGCACCCTC TAACATCTCA GTCTGATGAA ACTTTGGCTC ACTCCTAGGC CTATGTTTAG

            161                                                                                 240
  AJ314563  CCACCCAAAT TCTTACCGGG CTCTTCTTAG CCATGCACTA TACCTCCGAC ATTTCAACAG CTTTTTCCTC TGTCTGCCAT
  AF165079  CCACCCAAAT TCTTACCGGG CTCTTCTTAG CCATGCACTA TACCTCCGAC ATTTCAACAG CTTTTTCCTC TGTCTGCCAT
 Consensus  CCACCCAAAT TCTTACCGGG CTCTTCTTAG CCATGCACTA TACCTCCGAC ATTTCAACAG CTTTTTCCTC TGTCTGCCAT

            241                                                                                 320
  AJ314563  ATCTGCCGAG ATGTTAGTTA CGGCTGACTC ATTCGAAACA TCCACGCCAA CGGAGCATCT TTCTTTTTTA TTTGCATTTA
  AF165079  ATCTGCCGAG ATGTTAGTTA CGGCTGACTC ATTCGAAACA TCCACGCCAA CGGAGCATCT TTCTTTTTTA TTTGCATTTA
 Consensus  ATCTGCCGAG ATGTTAGTTA CGGCTGACTC ATTCGAAACA TCCACGCCAA CGGAGCATCT TTCTTTTTTA TTTGCATTTA

            321                                                                                 400
  AJ314563  TATACATATC GCCCGAGGAC TTTATTACGG CTCATACCTC TACAAAGAAA CCTGAAATAT CGGGGTGGTA CTTCTACTTC
  AF165079  TATACATATC GCCCGAGGAC TTTATTACGG CTCATACCTC TACAAAGAAA CCTGAAATAT CGGGGTGGTA CTTCTACTTC
 Consensus  TATACATATC GCCCGAGGAC TTTATTACGG CTCATACCTC TACAAAGAAA CCTGAAATAT CGGGGTGGTA CTTCTACTTC

            401                                                                464
  AJ314563  TCACTATAAT AACTGCCTTT GTGGGATACG TCCTCCCATG AGGACAAATA TCATTCTGGC GGA 
  AF165079  TCACTATAAT AACTGCCTTT GTGGGATACG TCCTCCCATG AGGACAAATA TCCTTCTGAG GAGC
 Consensus  TCACTATAAT AACTGCCTTT GTGGGATACG TCCTCCCATG AGGACAAATA TCaTTCTGac Gaa.

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890