Views
- State: published
Katsuwonus pelamis – Alignment
1 80 NC_005316 AAAAACCACC GTTGTAATTC AACTACAAGA ACCCTAATGG CAAGCCTCCG AAAAACCCAC CCACTACTAA AAATCGCTAA AB101290 AAAAACCACC GTTGTAATTC AACTACAAGA ACCCTAATGG CAAGCCTCCG AAAAACCCAC CCACTACTAA AAATCGCTAA AB098096 TAA AAATCGCTAA AB098093 A AB098095 A AB098094 A L11539 D63496 Consensus .......... .......... .......... .......... .......... .......... .......... .........a 81 160 NC_005316 CGACGCACTA GTTGACCTCC CCACCCCCTC TAACATTTCC GCATGATGAA ACTTTGGCTC ACTACTTGGT CTCTGCCTTA AB101290 CGACGCACTA GTTGACCTCC CCACCCCCTC TAACATTTCC GCATGATGAA ACTTTGGCTC ACTACTTGGT CTCTGCCTTA AB098096 CGACGCACTA GTTGACTTCC CCACCCCCTC TAACATTTCC GCATGATGAA ACTTTGGTTC ACTACTTGGT CTCTGCCTTA AB098093 CGACGCACTA GTTGACCTCC CCACCCCCTC TAACATTTCC GCATGATGAA ACTTTGGCTC ACTACTTGGT CTCTGCCTTA AB098095 CGACGCACTA GTTGACCTCC CCACCCCCTC TAACATTTCC GCATGATGAA ACTTTGGCTC ACTACTTGGT CTCTGCCTTA AB098094 CGACGCACTA GTTGACCTCC CCACCCCCTC TAACATTTCC GCATGATGAA ACTTTGGCTC ACTACTTGGT CTCTGCCTTA L11539 D63496 GGCTC ACTGGTTGGT CTCTGCCTTA Consensus cgacgcacta gttgacctcc ccaccccctc taacatttcc gcatgatgaa actttggctc actacttggt ctctgcctta 161 240 NC_005316 TTTCCCAAAT CCTAACAGGA CTATTCCTCG CAATACACTA TACCCCTGAC GTAGAATCAG CCTTCGCCTC AGTAGCCCAT AB101290 TTTCCCAAAT CCTAACAGGA CTATTCCTCG CAATACACTA TACCCCTGAC GTAGAATCAG CCTTCGCCTC AGTAGCCCAT AB098096 TTTCCCAAAT CCTAACAGGA CTATTCCTCG CAATACACTA TACCCCTGAC GTAGAATCAG CCTTCGCCTC AGTAGCCCAT AB098093 TTTCCCAAAT CCTAACAGGA CTATTCCTCG CAATACACTA TACCCCTGAC GTAGAATCAG CCTTCGCCTC AGTAGCCCAT AB098095 TTTCCCAAAT CCTAACAGGA CTATTCCTCG CAATACACTA TACCCCTGAC GTAGAATCAG CCTTCGCCTC AGTAGCCCAT AB098094 TTTCCCAAAT CCTAACAGGA CTATTCCTTG CAATACACTA TACCCCTGAC GTAGAATCAG CCTTCGCCTC AGTAGCCCAT L11539 T CCTAACAGGA CTATTCCTCG CAATACACTA TACCCCTGAC GTAGAATCAG CCTTCGCCTC AGTAGCCCAT D63496 TTTCCCAAAT CCTAACAGGA CTATTCCTCG CAATACACTA TACCCCTGAC GTAGAATCAG CCTTCGCCTC AGTAGCCCAT Consensus tttcccaaaT CCTAACAGGA CTATTCCTcG CAATACACTA TACCCCTGAC GTAGAATCAG CCTTCGCCTC AGTAGCCCAT 241 320 NC_005316 ATCTGCCGAG ACGTAAACTT CGGATGACTC ATCCGAAACC TCCATGCCAA CGGCGCTTCC TTCTTCTTCA TCTGCATTTA AB101290 ATCTGCCGAG ACGTAAACTT CGGATGACTC ATCCGAAACC TCCATGCCAA CGGCGCTTCC TTCTTCTTCA TCTGCATTTA AB098096 ATCTGCCGAG ACGTAAACTT CGGATGACTC ATCCGAAACC TCCATGCCAA CGGCGCTTCC TTCTTCTTCA TCTGCATTTA AB098093 ATCTGCCGAG ACGTAAACTT CGGATGACTC ATCCGAAACC TCCATGCCAA CGGCGCTTCC TTCTTCTTCA TCTGCATTTA AB098095 ATCTGCCGAG ACGTAAACTT CGGATGACTC ATCCGAAACC TCCATGCCAA CGGCGCTTCC TTCTTCTTCA TCTGCATTTA AB098094 ATCTGCCGAG ACGTAAACTT CGGATGACTC ATCCGAAACC TCCATGCCAA CGGCGCTTCC TTCTTCTTTA TCTGCATTTA L11539 ATCTGCCGAG ACGTAAACTT CGGATGACTC ATCCGAAACC TCCATGCCAA CGGCGCTTCC TTCTTCTTCA TCTGCATTTA D63496 ATCTGCCGAG ACGTAAACTT CGGATGACTC ATCCGAAACC TCCATGCCAA CGGCGCTTCC TTCTTCTTCA TCTGCATTTA Consensus ATCTGCCGAG ACGTAAACTT CGGATGACTC ATCCGAAACC TCCATGCCAA CGGCGCTTCC TTCTTCTTcA TCTGCATTTA 321 400 NC_005316 CTCCCACATT GGCCGAGGTC TCTACTACGG TTCCTACCTC TACAAAGAAA CATGAAACAT CGGTGTAGTC CTACTTCTCC AB101290 CTCCCACATT GGCCGAGGTC TCTACTACGG TTCCTACCTC TACAAAGAAA CATGAAACAT CGGTGTAGTC CTACTTCTCC AB098096 CTCCCATATT GGCCGAGGTC TCTACTACGG TTCCTACCTC TACAAAGAAA CATGAAACAT CGGTGTAGTT CTACTTCTCC AB098093 CTCCCATATT GGCCGAGGTC TCTACTACGG TTCCTACCTC TACAAAGAAA CATGAAACAT CGGTGTAGTC CTACTTCTCC AB098095 CTCCCATATT GGCCGAGGTC TCTACTACGG TTCCTACCTC TACAAAGAAA CATGAAACAT CGGTGTAGTC CTACTTCTCC AB098094 CTCCCACATT GGCCGAGGTC TCTACTACGG TTCCTACCTC TACAAAGAAA CATGAAACAT CGGTGTAGTC CTACTTCTCC L11539 CTCCCATATT GGCCGAGGTC TCTACTACGG TTCCTACCTC TACAAAGAAA CATGAAACAT CGGTGTAGTC CTACTTCTCC D63496 CTCCCATATT GGCCGAGGTC TCTACTACGG TTCATACCTC TACAAAGAAA CATGAAACAT CGGTGTAGTT CTACTTCTCC Consensus CTCCCAtATT GGCCGAGGTC TCTACTACGG TTCcTACCTC TACAAAGAAA CATGAAACAT CGGTGTAGTc CTACTTCTCC 401 464 NC_005316 TAGTAATGAT GACTGCTTTC GTCGGTTACG TACTTCCCTG AGGACAAATG TCATTCTGAG GAGC AB101290 TAGTAATGAT GACTGCTTTC GTCGGTTACG TACTTCCCTG AGGACAAATG TCATTCTGAG GAGC AB098096 TAGTAATGAT GACTGCTTTC GTCGGCTACG TACTTCCCTG AGGGCAAATG TCATTCTGAG GAGC AB098093 TAGTAATGAT GACTGCTTTC GTCGGCTACG TACTTCCCTG AGGGCAAATG TCATTCTGAG GAGC AB098095 TAGTAATGAT GACTGCTTTC GTCGGCTACG TACTTCCCTG AGGGCAAATG TCATTCTGGG GAGC AB098094 TAGTAATGAT GACTGCTTTC GTCGGCTACG TACTTCCCTG AGGACAAATG TCATTCTGAG GAGC L11539 TAGTAATGAT GACTGCYTTC GTCGGYTACG TACTTCCCTG AGGACAAATG TCATTCTGAG GAGC D63496 TAGTAATGAT GACTGCTTTC GTCGGCT Consensus TAGTAATGAT GACTGCtTTC GTCGGcTacg tacttccctg agg.caaatg tcattctgag gagc
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890