Skip to content

FischDB - die Fischdatenbank

Personal tools
You are here: Home » Fischkatalog » Oncorhynchus gorbuscha » alignment
Views
  • State: published

Oncorhynchus gorbuscha – Alignment

 


            1                                                                                    80
  AJ314562  AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCTAAT
  AF165077  AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCTAAT
 Consensus  AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCTAAT

            81                                                                                  160
  AJ314562  GACGCACTAG TCGACCTCCC AGCACCATCT AACATCTCAG TCTGATGAAA CTTTGGCTCA CTCCTAGGCT TATGCCTAGC
  AF165077  GACGCACTAG TCGACCTCCC AGCACCATCT AACATCTCAG TCTGATGAAA CTTTGGCTCA CTCCTAGGCT TATGCCTAGC
 Consensus  GACGCACTAG TCGACCTCCC AGCACCATCT AACATCTCAG TCTGATGAAA CTTTGGCTCA CTCCTAGGCT TATGCCTAGC

            161                                                                                 240
  AJ314562  CACCCAAATT CTTACCGGGC TATTCCTAGC CATGCACTAC ACTTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA
  AF165077  CACCCAAATT CTTACCGGGC TATTCCTAGC CATGCACTAC ACTTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA
 Consensus  CACCCAAATT CTTACCGGGC TATTCCTAGC CATGCACTAC ACTTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA

            241                                                                                 320
  AJ314562  TCTGCCGAGA TGTCAGCTAC GGCTGACTAA TTCGTAACAT CCATGCTAAC GGAGCATCTT TCTTTTTTAT TTGTATTTAT
  AF165077  TCTGCCGAGA TGTCAGCTAC GGCTGACTAA TTCGTAACAT CCATGCTAAC GGAGCATCTT TCTTTTTTAT TTGTATTTAT
 Consensus  TCTGCCGAGA TGTCAGCTAC GGCTGACTAA TTCGTAACAT CCATGCTAAC GGAGCATCTT TCTTTTTTAT TTGTATTTAT

            321                                                                                 400
  AJ314562  ATGCATATCG CCCGGGGACT TTATTATGGA TCATACCTAT ACAAAGAAAC CTGGAGTATC GGAGTTGTAC TTTTACTTCT
  AF165077  ATGCATATCG CCCGGGGACT TTATTATGGA TCATACCTAT ACAAAGAAAC CTGGAGTATC GGAGTTGTAC TTTTACTTCT
 Consensus  ATGCATATCG CCCGGGGACT TTATTATGGA TCATACCTAT ACAAAGAAAC CTGGAGTATC GGAGTTGTAC TTTTACTTCT

            401                                                               463
  AJ314562  CACTATAATA ACTGCATTCG TAGGCTACGT CCTCCCGTGA GGACAAATGT CATTCTGAGG GGC
  AF165077  CACTATAATA ACTGCATTCG TAGGCTACGT CCTCCCGTGA GGACAAATGT CCTTCTGAGG GGC
 Consensus  CACTATAATA ACTGCATTCG TAGGCTACGT CCTCCCGTGA GGACAAATGT CaTTCTGAGG GGC

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890