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Salmo trutta – Alignment
1 80 X76248 X76249 U63890 X76250 X76251 U63892 U63891 X76254 U63888 X76252 U63889 M64918 AJ314565 ACCGTTGTTA TTCAACTACA AGAACCTAAT GGCCAACCTC CGAAAAACTC ACCCCCTCCT AAAAATTGCT AATGACGCAC U58400 AT GGCCAACCTC CGAAAAACTC ACCCCCTCCT AAAAATTGCT AATGACGCAC AF172396 AY653215 X77524 CGAAAAACTC ACCCCCTCCT AAAAATTGCT AATGACGCAC X77526 CGAAAAACTC ACCCCCTCCT AAAAATTGCT AATGACGCAC X77523 CGAAAAACTC ACCCCCTCCT AAAAATTGCT AATGACGCAC Consensus .......... .......... .......... .......... 81 160 X76248 CTTTGGC TCACTCTTAG GCCTGTGTCT AGCCACCCAA X76249 CTTTGGC TCACTCTTAG GCCTGTGTCT AGCCACCCAA U63890 CTTTGGC TCACTCTTAG GCCTGTGTCT AGCCACCCAA X76250 CTTTGGC TCACTCTTAG GCTTATGTCT AGCCACCCAA X76251 CTTTGGC TCACTCTTAG GCTTATGTCT AGCCACCCAA U63892 CTTTGGC TCACTCTTAG GCTTGTGTCT AGCCACCCAA U63891 CTTTGGC TCACTCTTAG GCTTGTGTCT AGCCACCCAA X76254 CTTTGGC TCACTCTTAG GCTTATGTCT AGCCACCCAA U63888 CTTTGGC TCACTCTTAG GCTTATGTCT AGCCACCCAA X76252 CTTTGGC TCACTCTTAG GCTTGTGTCT AGCCACCCAA U63889 CTTTGGC TCACTCTTAG GCTTGTGTCT AGCCACCCAA M64918 TTNGGC TCACTNCTTA GCNTATGTCT AGCCACCCAA AJ314565 TAGTCGATCT CCCAGCACCA TCTAACATCT CAGTTTGATG AAACTTTGGC TCACTCTTAG GCTTATGTCT AGCCACCCAA U58400 TAGTCGATCT CCCAGCACCA TCTAACATCT CAGTTTGATG AAACTTTGGC TCACTCTTAG GCTTATGTCT AGCCACCCAA AF172396 GGC TCACTCTTAG GCTTATGTCT AGCCACCCAA AY653215 CTTTGGC TCACTCTTAG GCTTATGTCT AGCCACCCAA X77524 TAGTCGATCT CCCAGCACCA TCTAACATCT CAGTTTGATG AAACTTTGGC TCACTCTTAG GCCTGTGTCT AGCCACCCAA X77526 TAGTCGATCT CCCAGCACCA TCTAACATCT CAGTTTGATG AAACTTTGGC TCACTCTTAG GCTTATGTCT AGCCACCCAA X77523 TAGTCGATCT CCCAGCACCA TCTAACATCT CAGTTTGATG AAACTTTGGC TCACTCTTAG GCTTATGTCT AGCCACCCAA Consensus .......... .......... .......... .......... ...cTTtGGC TCACTCTTAG GCtTaTGTCT AGCCACCCAA 161 240 X76248 ATTCTTACCG GACTCTTCCT AGCTATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG X76249 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG U63890 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG X76250 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG X76251 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG U63892 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG U63891 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG X76254 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG U63888 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG X76252 ATTCTTACCG GACTCTTCCT AGCCATACAC TATACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG U63889 ATTCTTACCG GACTCTTCCT AGCCATACAC TATACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG M64918 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG AJ314565 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG U58400 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG AF172396 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG AY653215 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG X77524 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG X77526 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG X77523 ATTCTTACCG GACTCTTCCT AGCCATACAC TACACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG Consensus ATTCTTACCG GACTCTTCCT AGCCATACAC TAcACCTCCG ATATCTCAAC AGCCTTTTCC TCTGTTTGCC ACATTTGCCG 241 320 X76248 AGACGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA X76249 AGACGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA U63890 AGACGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA X76250 AGACGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA X76251 AGACGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA U63892 AGACGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA U63891 AGACGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TACATACATA X76254 AGATGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA U63888 AGATGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA X76252 AGACGTTAGC TACGGCTGAC TCATCCGGAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA U63889 AGACGTTAGC TACGGCTGAC TCATCCGGAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA M64918 AGATGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA AJ314565 AGATGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA U58400 AGATGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA AF172396 AGATGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA AY653215 AGACGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCAT CTTTCTTCTT TATCTGTATT TATATACATA X77524 AGACGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCA X77526 AGACGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCA X77523 AGATGTTAGC TACGGCTGAC TCATCCGAAA CATTCACGCT AACGGAGCA Consensus AGAcGTTAGC TACGGCTGAC TCATCCGaAA CATTCACGCT AACGGAGCAt ctttcttctt tatctgtatt tatatacata 321 400 X76248 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA X76249 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA U63890 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA X76250 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA X76251 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA U63892 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA U63891 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA X76254 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA U63888 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA X76252 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA U63889 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA M64918 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA AJ314565 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA U58400 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA AF172396 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTATA AY653215 TCGCCCGAGG ACTCTACTAT GGTTCCTACC TATATAAAGA AACCTGAAAT ATCGGAGTCG TACTGCTACT TCTCACTAT X77524 X77526 X77523 Consensus tcgcccgagg actctactat ggttcctacc tatataaaga aacctgaaat atcggagtcg tactgctact tctcactata 401 456 X76248 ATAACCGCCT TCGTGGGC X76249 ATAACCGCCT TCGTGGGC U63890 ATAACCGCCT TCGTGGGC X76250 ATAACCGCCT TCGTGGGC X76251 ATAACCGCCT TCGTGGGC U63892 ATAACCGCCT TCGTGGGC U63891 ATAACCGCCT TCGTGGGC X76254 ATAACCGCCT TCGTGGGC U63888 ATAACCGCCT TCGTGGGC X76252 ATAACCGCCT TCGTGGGC U63889 ATAACCGCCT TCGTGGGC M64918 ATAACCGCCT TCGTGGGCTA CGTTCTTCCA AJ314565 ATAACCGCCT TCGTGGGCTA CGTTCTTCCA TGAGGACAAA TYTCATTCTG U58400 ATAACCGCCT TCGTGGGCTA CGTTCTTCCA TGAGGGCAGA TGTCCTTCTG AGGAGC AF172396 ATAACCGCCT TCGTGGGCTA CGTTCTT AY653215 X77524 X77526 X77523 Consensus ataaccgcct tcgtgggc.. ..........
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890