Views
- State: published
Salvelinus alpinus – Alignment
1 80 NC_000861 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CACTCCTAAA AATTGCTAAT AF154851 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CACTCCTAAA AATTGCTAAT AY286023 AY286021 AY286022 AY286026 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 81 160 NC_000861 GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC AF154851 GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC AY286023 GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC AY286021 GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC AY286022 GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC AY286026 GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC Consensus GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC 161 240 NC_000861 CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA AF154851 CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA AY286023 CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA AY286021 CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA AY286022 CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA AY286026 CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA Consensus CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA 241 320 NC_000861 TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAT AF154851 TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAT AY286023 TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAC AY286021 TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAC AY286022 TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAC AY286026 TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAC Consensus TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAc 321 400 NC_000861 ATACATATCG CCCGAGGACT CTACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT AF154851 ATACATATCG CCCGAGGACT CTACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT AY286023 ATACATATCG CCCGAGGACT CTACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT AY286021 ATACATATCG CCCGAGGACT CTACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT AY286022 ATACATATCG CCCGAGGACT CTACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT AY286026 ATACATATCG CCCGAGGACT CTACTACGGG TCCTACTTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT Consensus ATACATATCG CCCGAGGACT CTACTACGGG TCCTACcTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT 401 463 NC_000861 AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGGCAAATAT CCTTCTGAGG AGC AF154851 AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGGCAAATAT CCTTCTGAGG AGC AY286023 AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGGCAAATAT CCTTCTGAGG AGC AY286021 AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGGCAAATAT CCTTCTGAGG AGC AY286022 AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGGCAAATAT CCTTCTGAGG AGC AY286026 AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGACAAATAT CCTTCTGAGG AGC Consensus AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGgCAAATAT CCTTCTGAGG AGC
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890