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  • State: published

Salvelinus alpinus – Alignment

 


            1                                                                                    80
 NC_000861  AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CACTCCTAAA AATTGCTAAT
  AF154851  AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CACTCCTAAA AATTGCTAAT
  AY286023                                                                                         
  AY286021                                                                                         
  AY286022                                                                                         
  AY286026                                                                                         
 Consensus  .......... .......... .......... .......... .......... .......... .......... ..........

            81                                                                                  160
 NC_000861  GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC
  AF154851  GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC
  AY286023  GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC
  AY286021  GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC
  AY286022  GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC
  AY286026  GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC
 Consensus  GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCTTAGGCC TATGTTTGGC

            161                                                                                 240
 NC_000861  CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA
  AF154851  CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA
  AY286023  CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA
  AY286021  CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA
  AY286022  CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA
  AY286026  CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA
 Consensus  CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCAACAGC TTTTTCCTCT GTGTGCCATA

            241                                                                                 320
 NC_000861  TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAT
  AF154851  TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAT
  AY286023  TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAC
  AY286021  TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAC
  AY286022  TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAC
  AY286026  TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAC
 Consensus  TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TCCGGAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAc

            321                                                                                 400
 NC_000861  ATACATATCG CCCGAGGACT CTACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT
  AF154851  ATACATATCG CCCGAGGACT CTACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT
  AY286023  ATACATATCG CCCGAGGACT CTACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT
  AY286021  ATACATATCG CCCGAGGACT CTACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT
  AY286022  ATACATATCG CCCGAGGACT CTACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT
  AY286026  ATACATATCG CCCGAGGACT CTACTACGGG TCCTACTTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT
 Consensus  ATACATATCG CCCGAGGACT CTACTACGGG TCCTACcTAT ATAAAGAAAC CTGAAATATT GGAGTAGTAT TACTACTTCT

            401                                                               463
 NC_000861  AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGGCAAATAT CCTTCTGAGG AGC
  AF154851  AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGGCAAATAT CCTTCTGAGG AGC
  AY286023  AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGGCAAATAT CCTTCTGAGG AGC
  AY286021  AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGGCAAATAT CCTTCTGAGG AGC
  AY286022  AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGGCAAATAT CCTTCTGAGG AGC
  AY286026  AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGACAAATAT CCTTCTGAGG AGC
 Consensus  AACTATAATG ACTGCCTTTG TAGGCTACGT TCTTCCATGA GGgCAAATAT CCTTCTGAGG AGC

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890