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  • State: published

Lota lota – Alignment

 


            1                                                                                    80
  AJ517496                                         ATGG CCAGCCTCCG AAAAACCCAC CCAATTCTAA AAATTGCTAA
 NC_004379  AAAAACCACC GTTGTAATTC AACTACAAAA ACCTTAATGG CCAGCCTCCG AAAAACCCAC CCAATTCTAA AAATTGCTAA
  AP004412  AAAAACCACC GTTGTAATTC AACTACAAAA ACCTTAATGG CCAGCCTCCG AAAAACCCAC CCAATTCTAA AAATTGCTAA
 Consensus  aaaaaccacc gttgtaattc aactacaaaa accttaATGG CCAGCCTCCG AAAAACCCAC CCAATTCTAA AAATTGCTAA

            81                                                                                  160
  AJ517496  TGACGCACTA GTAGACCTCC CCGCCCCTTC TAACATCTCA GTTTGATGAA ACTTTGGTTC TCTCCTAGGC CTTTGCTTAA
 NC_004379  TGACGCACTA GTAGACCTCC CCGCCCCTTC TAACATCTCA GTTTGATGAA ACTTTGGTTC TCTCCTAGGC CTTTGCTTAA
  AP004412  TGACGCACTA GTAGACCTCC CCGCCCCTTC TAACATCTCA GTTTGATGAA ACTTTGGTTC TCTCCTAGGC CTTTGCTTAA
 Consensus  TGACGCACTA GTAGACCTCC CCGCCCCTTC TAACATCTCA GTTTGATGAA ACTTTGGTTC TCTCCTAGGC CTTTGCTTAA

            161                                                                                 240
  AJ517496  TTACCCAGAT TTTAACAGGC CTATTCTTAG CCATACATTA CACCTCAGAC ATCGAAACAG CCTTTTCATC CGTTGTACAC
 NC_004379  TTACCCAGAT TTTAACAGGC CTATTCTTAG CCATACATTA CACCTCAGAC ATCGAAACAG CCTTTTCATC CGTTGTACAC
  AP004412  TTACCCAGAT TTTAACAGGC CTATTCTTAG CCATACATTA CACCTCAGAC ATCGAAACAG CCTTTTCATC CGTTGTACAC
 Consensus  TTACCCAGAT TTTAACAGGC CTATTCTTAG CCATACATTA CACCTCAGAC ATCGAAACAG CCTTTTCATC CGTTGTACAC

            241                                                                                 320
  AJ517496  ATCTGCCGTG ACGTAAACTA CGGATGACTA ATCCGAAATA TACACGCCAA CGGTGCCTCT TTTTTCTTTA TTTGCCTCTA
 NC_004379  ATCTGCCGTG ACGTAAACTA CGGATGACTA ATCCGAAATA TACACGCCAA CGGTGCCTCT TTTTTCTTTA TTTGCCTCTA
  AP004412  ATCTGCCGTG ACGTAAACTA CGGATGACTA ATCCGAAATA TACACGCCAA CGGTGCCTCT TTTTTCTTTA TTTGCCTCTA
 Consensus  ATCTGCCGTG ACGTAAACTA CGGATGACTA ATCCGAAATA TACACGCCAA CGGTGCCTCT TTTTTCTTTA TTTGCCTCTA

            321                                                                                 400
  AJ517496  TCTCCACATT GCCCGAGGCT TATATTACGG CTCATACCTA TTTATTGAAA CATGAAATAT TGGGGTTATT TTATTCCTGT
 NC_004379  TCTCCACATT GCCCGAGGCT TATATTACGG CTCATACCTA TTTATTGAAA CATGAAATAT TGGGGTTATT TTATTCCTGT
  AP004412  TCTCCACATT GCCCGAGGCT TATATTACGG CTCATACCTA TTTATTGAAA CATGAAATAT TGGGGTTATT TTATTCCTGT
 Consensus  TCTCCACATT GCCCGAGGCT TATATTACGG CTCATACCTA TTTATTGAAA CATGAAATAT TGGGGTTATT TTATTCCTGT

            401                                                                464
  AJ517496  TAGTAATAGT AACCTCTTTT G                                               
 NC_004379  TAGTAATAGT AACCTCTTTT GTAGGCTATG TTCTTCCCTG AGGACAAATA TCCTTCTGAG GAGC
  AP004412  TAGTAATAGT AACCTCTTTT GTAGGCTATG TTCTTCCCTG AGGACAAATA TCCTTCTGAG GAGC
 Consensus  TAGTAATAGT AACCTCTTTT Gtaggctatg ttcttccctg aggacaaata tccttctgag gagc

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890