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  • State: published

Anguilla japonica – Alignment

 


            1                                                                                    80
    D84305                                         ATGG CAAACCTACG AAAAACCCAC CCACTTCTAA AAATTGCTAA
 NC_002707  AAAAACCACC GTTGTAATTC AACTATAGAA ACAATAATGG CAAACCTACG AAAAACCCAC CCACTTCTAA AAATTGCTAA
  AB038556  AAAAACCACC GTTGTAATTC AACTATAGAA ACAATAATGG CAAACCTACG AAAAACCCAC CCACTTCTAA AAATTGCTAA
  AB021772                                         ATGG CAAACCTACG AAAAACCCAC CCACTTCTAA AAATTGCTAA
  AF479272                                         ATGG CAAACCTACG AAAAACCCAC CCACTTCTAA AAATTGCTAA
  AF006703                                         ATGG CAAACGTACG GAAAACCCAC CCACTTCTAA AAATTGCTAA
  AF006702                                         ATGG CAAACGTACG GAAAACCCAC CCACTTCTAA AAATTGCTAA
  AF198357                                                         AAAAACCCAC CCACTTCTAA AAATTGCTAA
  AF485277                                                                                         
    D21227                                                                                         
 Consensus  .......... .......... .......... ......atgg caaac.tacg .aaaacccac ccacttctaa aaattgctaa

            81                                                                                  160
    D84305  CGATGCCCTA GTGGATCTAC CAACCCCATC CAACATTTCA GCATGATGAA ATTTTGGCTC TCTCCTAGGA CTATGCCTTA
 NC_002707  CGATGCCCTA GTGGATCTAC CAACCCCATC CAACATTTCA GCATGATGAA ATTTTGGCTC TCTCCTAGGA CTATGCCTTA
  AB038556  CGATGCCCTA GTGGATCTAC CAACCCCATC CAACATTTCA GCATGATGAA ATTTTGGCTC TCTCCTAGGA CTATGCCTTA
  AB021772  CGATGCCCTA GTGGATCTAC CAACCCCATC CAACATTTCA GCATGATGAA ATTTTGGCTC TCTCCTAGGA CTATGCCTTA
  AF479272  CGATGCCCTA GTGGATCTAC CAACCCCATC CAACATTTCA GCATGATGAA ATTTTGGCTC TCTCCTAGGA CTATGCCTTA
  AF006703  CGATGCCCTA GTGGATCTAC CAACCCCATC CAACATTTCA GCATGATGAA ATTTTGGCTC TCTCCTAGGA CTATGCCTTA
  AF006702  CGATGCCCTA GTGGATCTAC CAACCCCATC CAACATTTCA GCATGATGAA ATTTTGGCTC TCTCCTAGGA CTATGCCTTA
  AF198357  CGATGCCCTA GTGGATCTAC CAACCCCATC CAACATTTCA GCATGATGAA ATTTTGGCTC TCTCCTAGGA CTATGCCTTA
  AF485277                 ATCTAC CAACCCCATC CAACATTTCA GCATGATGAA ATTTTGGCTC TCTCCTAGGA CTATGCCTTA
    D21227                                                              GGCTC TCTCCTAGGA CTATGCCTTA
 Consensus  cgatgcccta gtggatctac caaccccatc caacatttca gcatgatgaa attttGGCTC TCTCCTAGGA CTATGCCTTA

            161                                                                                 240
    D84305  TTTCGCAAAT CCTTACAGGA TTATTCCTAG CAATACACTA CACATCAGAC ATTTCAACTG CCTTTTCCTC AGTAGCCCAC
 NC_002707  TTTCGCAAAT CCTTACAGGA TTATTCCTAG CAATACACTA CACATCAGAC ATTTCAACTG CCTTTTCCTC AGTAGCCCAC
  AB038556  TTTCGCAAAT CCTTACAGGA TTATTCCTAG CAATACACTA CACATCAGAC ATTTCAACTG CCTTTTCCTC AGTAGCCCAC
  AB021772  TTTCGCAAAT CCTTACAGGA TTATTCCTAG CAATACACTA CACATCAGAC ATTTCAACTG CCTTTTCCTC AGTAGCCCAC
  AF479272  TTTCGCAAAT CCTTACAGGA TTATTCCTAG CAATACACTA CACATCAGAC ATTTCAACTG CCTTTTCCTC AGTAGCCCAC
  AF006703  TCTCGCAAAT CCTTACAGGA TTATTCCTAG CAATACACTA CACATCAGAC ATTTCAACTG CCTTTTCCTC AGTAGCCCAC
  AF006702  TCTCGCAAAT CCTTACAGGA TTATTCCTAG CAATACACTA CACATCAGAC ATTTCAACTG CCTTTTCCTC AGTAGCCCAC
  AF198357  TTTCGCAAAT CCTTACAGGA TTATTCCTAG CAATACACTA CACATCAGAC ATTTCAACTG CCTTTTCCTC AGTAGCCCAC
  AF485277  TTTCGCAAAT CCTTACAGGA TTATTCCTAG CAATACACTA CACATCAGAC ATTTCAACTG CCTTTTCCTC AGTAGCCCAC
    D21227  TTTCGCAAAT CCTTACAGGA TTATTCCTAG CAATACACTA CACATCAGAC ATTTCAACTG CCTTTTCCTC AGTAGCCCAC
 Consensus  TtTCGCAAAT CCTTACAGGA TTATTCCTAG CAATACACTA CACATCAGAC ATTTCAACTG CCTTTTCCTC AGTAGCCCAC

            241                                                                                 320
    D84305  ATCTGCCGAG ACGTTAATTA TGGATGATTC ATCCGAAATT TACATGCAAA CGGGGCCTCC TTCTTCTTTA TCTGCCTCTA
 NC_002707  ATCTGCCGAG ACGTTAATTA TGGATGATTC ATCCGAAATT TACATGCAAA CGGGGCCTCC TTCTTCTTTA TCTGCCTCTA
  AB038556  ATCTGCCGAG ACGTTAATTA TGGATGATTC ATCCGAAATT TACATGCAAA CGGGGCCTCC TTCTTCTTTA TCTGCCTCTA
  AB021772  ATCTGCCGAG ACGTTAATTA TGGATGATTC ATCCGAAATT TACATGCAAA CGGGGCCTCC TTCTTCTTTA TCTGCCTCTA
  AF479272  ATCTGCCGAG ACGTTAATTA TGGATGATTC ATCCGAAATT TACATGCAAA CGGGGCCTCC TTCTTCTTTA TCTGCCTCTA
  AF006703  ATCTGCCGAG ACGTTAATTA TGGATGATTC ATCCGAAATT TACATGCAAA CGGGGCCTCC TTCTTCTTTA TCTGCCTCTA
  AF006702  ATCTGCCGAG ACGTTAATTA TGGATGATTC ATCCGAAATT TACATGCAAA CGGGGCCTCC TTCTTCTTTA TCTGCCTCTA
  AF198357  ATCTGCCGAG ACGTTAATTA TGGATGATTC ATCCGAAATT TACATGCAAA CGGGGCCTCC TTCTTCTTTA TCTGCCTCTA
  AF485277  ATCTGCCGAG ACGTTAATTA TGGATGATTC ATCCGAAATT TACATGCAAA CGGGGCCTCC TTCTTCTTTA TCTGCCTCTA
    D21227  ATCTGCCGAG ACGTTAATTA TGGATGATTC ATCCGAAATT TACATGCAAA CGGGGCCTCC TTCTTCTTTA TCTGCCTCTA
 Consensus  ATCTGCCGAG ACGTTAATTA TGGATGATTC ATCCGAAATT TACATGCAAA CGGGGCCTCC TTCTTCTTTA TCTGCCTCTA

            321                                                                                 400
    D84305  CCTACACATT GCCCGAGGAC TTTACTACGG CTCATACCTT TACAAAGAAA CATGAAACAT CGGAGTCGTA CTATTCCTAT
 NC_002707  CCTACACATT GCCCGAGGAC TTTACTACGG CTCATACCTT TACAAAGAAA CATGAAACAT CGGAGTCGTA CTATTCCTAT
  AB038556  CCTACACATT GCCCGAGGAC TTTACTACGG CTCATACCTT TACAAAGAAA CATGAAACAT CGGAGTCGTA CTATTCCTAT
  AB021772  CCTACACATT GCCCGAGGAC TTTACTACGG CTCATACCTT TACAAAGAAA CATGAAACAT CGGAGTCGTA CTATTCCTAT
  AF479272  CCTACACATT GCCCGAGGAC TTTACTACGG CTCATACCTT TACAAAGAAA CATGAAACAT CGGAGTCGTA CTATTTCTAT
  AF006703  CCTACACATT GCCCGAGGAC TTTACTACGG CTCATACCTT TACAAAGAAA CATGAAACAT CGGAGTCGTA CTATTCCTAT
  AF006702  CCTACACATT GCCCGAGGAC TTTACTACGG CTCATACCTT TACAAAGAAA CATGAAACAT CGGAGTCGTA CTATTCCTAT
  AF198357  CCTACACATT GCCCGAGGAC TTTACTACGG CTCATACCTT TACAAAGAAA CATGAAACAT CGGAGTCGTA CTATTCCTAT
  AF485277  CCTACACATT GCCCGAGGAC TTTACTACGG CTCATACCTT TACAAAGAAA CATGAAACAT CGGAGTCGTA CTATTCCTAT
    D21227  CCTACACATT GCCCGAGGAC TTTACTACGG CTCATACCTT TACAAAGAAA CATGAAACAT CGGAGTCGTA CTATTCCTAT
 Consensus  CCTACACATT GCCCGAGGAC TTTACTACGG CTCATACCTT TACAAAGAAA CATGAAACAT CGGAGTCGTA CTATTCCTAT

            401                                                                464
    D84305  TAGTAATAAT AACTGCATTC GTAGGATATG TACTCCCATG AGGACA                    
 NC_002707  TAGTAATAAT AACTGCATTC GTAGGATATG TACTCCCATG AGGACAAATA TCATTCTGAG GTGC
  AB038556  TAGTAATAAT AACTGCATTC GTAGGATATG TACTCCCATG AGGACAAATA TCATTCTGAG GTGC
  AB021772  TAGTAATAAT AACTGCATTC GTAGGATATG TACTCCCATG AGGACAAATA TCATTCTGAG GTGC
  AF479272  TAGTAATAAT AACTGCATTC GTAGGATATG TACTCCCATG AGGACAAATA TCATTCTGAG GTGC
  AF006703  TAGTAATAAT AACTGCATTC GTAGGATATG TACTCCCATG AGGACAAATA TCATTCTGAG GTGC
  AF006702  TAGTAATAAT AACTGCATTC GTAGGATATG TACTCCCATG AGGACAAATA TCATTCTGAG GTGC
  AF198357  TAGTAATAAT AACTGCATTC GTAGGATATG TACTCCCATG AGGACAAATA TCATTCTGAG GTGC
  AF485277  TAGTAATAAT AACTGCATTC GTAGGATATG TACTCCCATG AGGACAAATA TCATTCTGAG GTGC
    D21227  TAGTAATAAT AACTGCATTC GTAGGATATG TACTCCCA                             
 Consensus  TAGTAATAAT AACTGCATTC GTAGGATATG TACTCCCAtg aggacaaata tcattctgag gtgc

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890