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- State: published
Oncorhynchus tschawytscha – Alignment
1 80 NC_002980 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCTAAT AF392054 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCTAAT AJ314566 AAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCTAAT Consensus aAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCTAAT 81 160 NC_002980 GACGCACTAG TCGACCTCCC AGCACCCTCT AACATTTCAG TCTGATGAAA CTTTGGCTCA CTCCTAGGCC TATGTTTAGC AF392054 GACGCACTAG TCGACCTCCC AGCACCCTCT AACATTTCAG TCTGATGAAA CTTTGGCTCA CTCCTAGGCC TATGTTTAGC AJ314566 GACGCACTAG TCGACCTCCC AGCACCCTCT AACATTTCAG TCTGATGAAA CTTTGGCTCA CTCCTAGGCC TATGTTTAGC Consensus GACGCACTAG TCGACCTCCC AGCACCCTCT AACATTTCAG TCTGATGAAA CTTTGGCTCA CTCCTAGGCC TATGTTTAGC 161 240 NC_002980 CACCCAAATT CTTACCGGGC TCTTCTTAGC CATACACTAT ACCTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA AF392054 CACCCAAATT CTTACCGGGC TCTTCTTAGC CATACACTAT ACCTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA AJ314566 CACCCAAATT CTTACCGGGC TCTTCTTAGC CATACACTAT ACCTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA Consensus CACCCAAATT CTTACCGGGC TCTTCTTAGC CATACACTAT ACCTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA 241 320 NC_002980 TTTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAATAT CCACGCCAAC GGGGCATCTT TCTTTTTTAT TTGCATTTAT AF392054 TTTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAATAT CCACGCCAAC GGGGCATCTT TCTTTTTTAT TTGCATTTAT AJ314566 TTTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAATAT CCACGCCAAC GGGGCATCTT TCTTTTTTAT TTGCATTTAT Consensus TTTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAATAT CCACGCCAAC GGGGCATCTT TCTTTTTTAT TTGCATTTAT 321 400 NC_002980 ATACATATCG CCCGAGGACT TTATTATGGC TCTTACCTCT ACAAAGAAAC CTGAAATATT GGGGTGGTAC TTCTACTTCT AF392054 ATACATATCG CCCGAGGACT TTATTATGGC TCTTACCTCT ACAAAGAAAC CTGAAATATT GGGGTGGTAC TTCTACTTCT AJ314566 ATACATATCG CCCGAGGACT TTATTATGGC TCTTACCTCT ACAAAGAAAC CTGAAATATT GGGGTGGTAC TTCTACTTCT Consensus ATACATATCG CCCGAGGACT TTATTATGGC TCTTACCTCT ACAAAGAAAC CTGAAATATT GGGGTGGTAC TTCTACTTCT 401 463 NC_002980 CACTATAATA ACCGCCTTTG TAGGCTACGT CCTCCCATGA GGACAAATAT CCTTCTGAGG GGC AF392054 CACTATAATA ACCGCCTTTG TAGGCTACGT CCTCCCATGA GGACAAATAT CCTTCTGAGG GGC AJ314566 CACTATAATA ACCGCCTTTG TAGGCTACGT CCTCCCATGA GGACAAATAT CATTCTGAGC G Consensus CACTATAATA ACCGCCTTTG TAGGCTACGT CCTCCCATGA GGACAAATAT CcTTCTGAGg Ggc
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890