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  • State: published

Oncorhynchus tschawytscha – Alignment

 


            1                                                                                    80
 NC_002980  AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCTAAT
  AF392054  AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCTAAT
  AJ314566   AAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCTAAT
 Consensus  aAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCATC CTCTCCTAAA AATCGCTAAT

            81                                                                                  160
 NC_002980  GACGCACTAG TCGACCTCCC AGCACCCTCT AACATTTCAG TCTGATGAAA CTTTGGCTCA CTCCTAGGCC TATGTTTAGC
  AF392054  GACGCACTAG TCGACCTCCC AGCACCCTCT AACATTTCAG TCTGATGAAA CTTTGGCTCA CTCCTAGGCC TATGTTTAGC
  AJ314566  GACGCACTAG TCGACCTCCC AGCACCCTCT AACATTTCAG TCTGATGAAA CTTTGGCTCA CTCCTAGGCC TATGTTTAGC
 Consensus  GACGCACTAG TCGACCTCCC AGCACCCTCT AACATTTCAG TCTGATGAAA CTTTGGCTCA CTCCTAGGCC TATGTTTAGC

            161                                                                                 240
 NC_002980  CACCCAAATT CTTACCGGGC TCTTCTTAGC CATACACTAT ACCTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA
  AF392054  CACCCAAATT CTTACCGGGC TCTTCTTAGC CATACACTAT ACCTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA
  AJ314566  CACCCAAATT CTTACCGGGC TCTTCTTAGC CATACACTAT ACCTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA
 Consensus  CACCCAAATT CTTACCGGGC TCTTCTTAGC CATACACTAT ACCTCCGACA TTTCAACAGC TTTTTCCTCT GTCTGCCACA

            241                                                                                 320
 NC_002980  TTTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAATAT CCACGCCAAC GGGGCATCTT TCTTTTTTAT TTGCATTTAT
  AF392054  TTTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAATAT CCACGCCAAC GGGGCATCTT TCTTTTTTAT TTGCATTTAT
  AJ314566  TTTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAATAT CCACGCCAAC GGGGCATCTT TCTTTTTTAT TTGCATTTAT
 Consensus  TTTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAATAT CCACGCCAAC GGGGCATCTT TCTTTTTTAT TTGCATTTAT

            321                                                                                 400
 NC_002980  ATACATATCG CCCGAGGACT TTATTATGGC TCTTACCTCT ACAAAGAAAC CTGAAATATT GGGGTGGTAC TTCTACTTCT
  AF392054  ATACATATCG CCCGAGGACT TTATTATGGC TCTTACCTCT ACAAAGAAAC CTGAAATATT GGGGTGGTAC TTCTACTTCT
  AJ314566  ATACATATCG CCCGAGGACT TTATTATGGC TCTTACCTCT ACAAAGAAAC CTGAAATATT GGGGTGGTAC TTCTACTTCT
 Consensus  ATACATATCG CCCGAGGACT TTATTATGGC TCTTACCTCT ACAAAGAAAC CTGAAATATT GGGGTGGTAC TTCTACTTCT

            401                                                               463
 NC_002980  CACTATAATA ACCGCCTTTG TAGGCTACGT CCTCCCATGA GGACAAATAT CCTTCTGAGG GGC
  AF392054  CACTATAATA ACCGCCTTTG TAGGCTACGT CCTCCCATGA GGACAAATAT CCTTCTGAGG GGC
  AJ314566  CACTATAATA ACCGCCTTTG TAGGCTACGT CCTCCCATGA GGACAAATAT CATTCTGAGC G  
 Consensus  CACTATAATA ACCGCCTTTG TAGGCTACGT CCTCCCATGA GGACAAATAT CcTTCTGAGg Ggc

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890