Skip to content

FischDB - die Fischdatenbank

Personal tools
You are here: Home » Fischkatalog » Gadus macrocephalus » alignment
 
Views
  • State: published

Gadus macrocephalus – Alignment

Infos zum Verfahren

 


            1                                                                                    80
  AB078152  ATGGCCAGCC TTCGGAAAAC CCATCCAATC CTAAAAATTG CTAATAGCGC ATTAGTTGAT CTCCCCGCCC CCTCCAATAT
  AF081683  ATGGCCAGCC TTCGGAAAAC CCATCCAATC CTAAAAATTG CTAATAGCGC ATTAGTTGAT CTCCCCGCCC CCTCCAATAT
  AY237802                                                                                         
 Consensus  atggccagcc ttcggaaaac ccatccaatc ctaaaaattg ctaatagcgc attagttgat ctccccgccc cctccaatat

            81                                                                                  160
  AB078152  TTCAGTATGA TGAAATTTTG GCTCTCTTCT AGGCCTTTGC TTAATTACTC AACTTCTAAC AGGACTATTT CTAGCTATAC
  AF081683  TTCAGTATGA TGAAATTTTG GCTCTCTTCT AGGCCTTTGC TTAATTACTC AACTTCTAAC AGGACTATTT CTAGCTATAC
  AY237802                  TTTTG GCTCTCTTCT AGGCCTTTGC TTAATTACTC AACTTCTAAC AGGACTATTT CTAGCTATAC
 Consensus  ttcagtatga tgaaaTTTTG GCTCTCTTCT AGGCCTTTGC TTAATTACTC AACTTCTAAC AGGACTATTT CTAGCTATAC

            161                                                                                 240
  AB078152  ACTACACCTC AGACATCGAG ACAGCCTTCT CATCCGTAGT CCACATCTGT CGTGATGTAA ATTACGGTTG ACTTATTCGG
  AF081683  ACTACACCTC AGACATCGAG ACAGCCTTCT CATCCGTAGT CCACATCTGT CGTGATGTAA ATTACGGTTG ACTCATTCGG
  AY237802  ACTATACCTC AGACATCGAG ACAGCCTTCT CATCCGTAGT CCACATCTGT CGTGATGTAA ATTACGGTTG ACTTATTCGG
 Consensus  ACTAcACCTC AGACATCGAG ACAGCCTTCT CATCCGTAGT CCACATCTGT CGTGATGTAA ATTACGGTTG ACTtATTCGG

            241                                                                                 320
  AB078152  AATATACATG CTAACGGTGC CTCTTTCTTT TTTATTTGTC TCTATATACA TATTGCCCGA GGTCTCTATT ATGGCTCTTA
  AF081683  AATATACATG CTAACGGTGC CTCTTTCTTT TTTATTTGTC TCTATATACA TATTGCCCGA GGTCTCTATT ATGGCTCTTA
  AY237802  AATATACATG CTAACGGTGC CTCTTTCTTT TTTATTTGTC TCTATATACA TATTGCCCGA GGTCTCTATT ATGGCTCTTA
 Consensus  AATATACATG CTAACGGTGC CTCTTTCTTT TTTATTTGTC TCTATATACA TATTGCCCGA GGTCTCTATT ATGGCTCTTA

            321                                                                                 400
  AB078152  TCTTTTTGTA GAAACATGAA ACATCGGGGT TGTCCTTTTC CTTTTAGTAA TAATAACCTC TTTCGTAGGT TACGTCCTTC
  AF081683  TCTTTTTGTA GAAACATGAA ACATCGGAGT TGTCCTTTTC CTTTTAGTAA TAATAACCTC TTTCGTAGGT TACGTCCTCC
  AY237802  TCTTTTTGTA GAAACATGAA ACATCGGAGT TGTCCTTTTC CTTTTAGTAA TAATAACCTC TTTCGTAGGT TACGTCCTTC
 Consensus  TCTTTTTGTA GAAACATGAA ACATCGGaGT TGTCCTTTTC CTTTTAGTAA TAATAACCTC TTTCGTAGGT TACGTCCTtC

            401                        428
  AB078152  CCTGAGGACA AATATCATTC TGGGGGGC
  AF081683  C                             
  AY237802  CC                            
 Consensus  Cc........ .......... ........
Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890