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  • State: published

Acipenser ruthenus – Alignment

 


            1                                                                                    80
  AJ249694         CAA TGGCAAACAT CCGAAAAACA CACCCACTAC TTAAAATTAT TAATGGAGCA TTTATTGACC TCCCCACACC
  AF283733  TAAAAACCAA TGGCAAACAT CCGGAAAACA CACCCACTAC TTAAAATTAT TAATGGAGCA TTTATTGACC TCCCCACACC
    X95055                                                                                         
  AF308927                                                                                         
  AF308926                                                                                         
  AF308924                                                                                         
 Consensus  .......... .......... .......... .......... .......... .......... .......... ..........

            81                                                                                  160
  AJ249694  CTCCAACATC TCCGTGTGAT GAAATTTTGG CTCGCTCTTG GGCCTCTGCC TTGTCACACA AATCCTAACA GGACTATTTC
  AF283733  CTCCAACATC TCCGTGTGAT GAAATTTTGG CTCACTCCTA GGCCTCTGCC TTGTCACACA AATCCTAACA GGACTATTTC
    X95055                                       CTCCTA GGCCTCTGCC TTGTCACACA AATCCTAACA GGACTATTTC
  AF308927                                       CTCTTG GGCCTCTGCC TTGTCACACA AATCCTAACA GGACTATTTC
  AF308926                                       CTCTTG GGCCTCTGCC TTGTCACACA AATCCTAACA GGACTATTTC
  AF308924                                       CTCCTG GGCCTCTGCC TTGTCACACA AATCCTAACA GGACTATTTC
 Consensus  .......... .......... .......... ....CTCcTg GGCCTCTGCC TTGTCACACA AATCCTAACA GGACTATTTC

            161                                                                                 240
  AJ249694  TCGCAATACA CTACACAGCT GACATTTCAA CAGCCTTCTC CTCTGTCGCC CACATCTGCC GAGATGTAAA TTACGGATGA
  AF283733  TTGCAATACA CTACACAGCT GACATTTCAA CAGCCTTCTC CTCTGTTGCC CACATCTGCC GAGACGTAAA TTACGGATGA
    X95055  TTGCAATACA CTACACAGCT GACATTTCAA CAGCCTTCTC CTCCGTCGCC CACATCTGCC GAGACGTGAA TTACGGATGA
  AF308927  TCGCAATACA CTACACAGCT GACATTTCAA CAGCCTTCTC CTCTGTCGCC CACATCTGCC GAGATGTAAA TTACGGATGA
  AF308926  TCGCAATACA CTACACAGCT GACATTTCAA CAGCCTTCTC CTCTGTCGCC CACATCTGCC GAGATGTAAA TTACGGATGA
  AF308924  TCGCAATACA CTACACAGCT GACATTTCAA CAGCCTTCTC CTCTGTCGCC CACATCTGCC GAGATGTAAA TTACGGATGA
 Consensus  TcGCAATACA CTACACAGCT GACATTTCAA CAGCCTTCTC CTCtGTcGCC CACATCTGCC GAGAtGTaAA TTACGGATGA

            241                                                                                 320
  AJ249694  TTAATCCGCA ATATTCATGC AAACGGGGCC TCCTTCTTCT TTATCTGCTT GTATCTCCAC GTAGCACGAG GCATGTACTA
  AF283733  CTAATCCGAA ATATTCATGC AAACGGGGCC TCCTTCTTCT TTATCTGCTT GTACCTTCAC GTAGCACGAG GTATATACTA
    X95055  CTAATCCGAA ATATTCACGC AAACGGGGCC TCCTTCTTCT TCATCTGCTT ATACCTTCAC GTAGCACGAG GTATGTACTA
  AF308927  TTAATCCGCA ATATTCATGC AAACGGGGCC TCCTTCTTCT TTATCTGCTT GTATCTCCAC GTAGCACGAG GCATGTACTA
  AF308926  TTAATCCGCA ATATTCATGC AAACGGGGCC TCCTTCTTCT TTATCTGCTT GTATCTCCAC GTAGCGCGAG GCATGTACTA
  AF308924  TTAATCCGCA ATATTCATGC AAACGGGGCC TCCTTCTTCT TTATCTGCTT GTATCTCCAC GTAGCACGAG GCATGTACTA
 Consensus  tTAATCCGcA ATATTCAtGC AAACGGGGCC TCCTTCTTCT TtATCTGCTT gTAtCTcCAC GTAGCaCGAG GcATgTACTA

            321                                                                                 400
  AJ249694  CGGTTCTTAT CTCCAAAAAG AAACCTGAAA CATCGGAGTA ATCCTCCTGC TCCTCACCAT AATAACCGCC TTCGTAGGAT
  AF283733  TGGTTCATAC CTCCAAAAAG AAACCTGAAA TATCGGAGTA ATCCTCCTGC TTCTCACCAT AATAACCGCC TTCGTGGGAT
    X95055  TGGTTCATAC CTCCAAAAAG AAACCTGAAA CATCGGAGTA ATCCTCCTGC TTCTCACCAT AATA                 
  AF308927  CGGTTCTTAT CTCCAAAAAG AAACCTGAAA CATCGGAGTA ATCCTCCTGC TCCT                            
  AF308926  CGGTTCTTAT CTCCAAAAAG AAACCTGAAA CATCGGAGTA ATCCTCCTGC TCCT                            
  AF308924  CGGTTCTTAT CTCCAAAAAG AAACCTGAAA CATCGGAGTA ATCCTCCTGC TCCT                            
 Consensus  cGGTTCtTAt CTCCAAAAAG AAACCTGAAA cATCGGAGTA ATCCTCCTGC TcCT...... .......... ..........

            401                                  437
  AJ249694  ATGTACTGCC CTGAGGACAG ATATCATTTT GAGGAGC
  AF283733  ATGTACTGCC C                            
    X95055                                          
  AF308927                                          
  AF308926                                          
  AF308924                                          
 Consensus  .......... .......... .......... .......

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890