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- State: published
Leuciscus leuciscus – Alignment
1 80 AY509823 ATGGCAAGCC TACGAAAAAC CCATCCATTA ATAAAAATCG CCAATGGCGC ACTAGTCGAC CTTCCAACCC CATCCAACAT Y10449 ATGGCAAGCC TACGAAAAAC CCATCCATTA ATAAAAATCG CTAATGACGC ACTAGTCGAC CTTCCAACCC CATCCAACAT AJ555553 ATCCATTA ATAAAAATCG CCAATGGCGC ACTAGTCGAC CTTCCAACCC CATCCAACAT AJ388449 Consensus .......... .......... ..atccatta ataaaaatcg c.aatg.cgc actagtcgac cttccaaccc catccaacat 81 160 AY509823 TTCAGCCCTC TGAAACTTCG GGTCCCTCCT AGGATTATGT TTAATTACCC AAATCCTAAC GGGATTATTT TTAGCCATGC Y10449 TTCAGCACTC TGAAACTTCG GATCCCTCCT AGGATTATGT TTAATTACCC AAATCCTAAC GGGATTATTT TTAGCCATAC AJ555553 TTCAGCCCTC TGAAACTTCG GGTCCCTCCT AGGATTATGT TTAATTACCC AAATCCTAAC GGGATTGTTT TTAGCCATGC AJ388449 AACTTCG GGTCCCTCCT AGGGTTGTTT TTAATTACCC AAATCCTAAC AGGATTATTT TTGGCCATAC Consensus ttcagc.ctc tgaAACTTCG GgTCCCTCCT AGGaTTaTgT TTAATTACCC AAATCCTAAC gGGATTaTTT TTaGCCATaC 161 240 AY509823 ACTACACCTC TGATATTTCG ACCGCATTTT CATCAGTAAC TCACATTTGT CGGGACGTTA ACTACGGCTG GCTTATCCGG Y10449 ACTACACCTC TGATATTTCG ACCGCATTTT CATCAGTAAC TCACATTCGT CGGGACGTTA ACTACGGCTG GCTCATCCGA AJ555553 ACTACACCTC TGATATTTCG ACCGCATTTT CATCAGTAAC TCACATTTGT CGGGACGTTA ACTACGGCTG GCTTATCCGG AJ388449 ACTACACCTC TAACATTTCA ACCGCATTCT CATCAGTAAC TCACATTTGT CGGGACTTTA ACTACGGCTG ACTTATCCAA Consensus ACTACACCTC TgAtATTTCg ACCGCATTtT CATCAGTAAC TCACATTtGT CGGGACgTTA ACTACGGCTG gCTtATCCga 241 320 AY509823 AACCTACACG CCAACGGAGC GTCATTCTTC TTCATCTGTA TTTATATACA TATCGCGCGA GGCCTATATT ACGGGTCCTA Y10449 AACCTGCACG CCAACGGAGC GTCATTCTTC TTCATCTGTA TTTATATGCA TATCGCGCGA GGCCTATATT ACGGGTCCTA AJ555553 AACCTACACG CCAACGGAGC GTCATTCTTC TTCATCTGTA TTTATATACA TATCGCGCGA GGCCTATATT ACGGGTCCTA AJ388449 AACCTGCACG CCAACGGGGC NTCATTCTCC TTCATCTGTA TTTATATACA TATTGCACAA GGCCTGTATT ACGGGTCCTA Consensus AACCTgCACG CCAACGGaGC gTCATTCTtC TTCATCTGTA TTTATATaCA TATcGCgCgA GGCCTaTATT ACGGGTCCTA 321 400 AY509823 TCTTTATAAG GAGACCTGAA ATATCGGTGT GGTACTACTT CTTCTAGTCA TAGCAACCGC CTTCGTGGGC TATGTACTTC Y10449 TCTTTATAAG GAGACCTGAA ATATTGGTGT GGTACTACTT CTTCTAGTCA TAGCAACCGC CTTCGTGGGC TATGTACTTC AJ555553 TCTTTATAAG GAGACCTGAA ATATCGGTGT AGTACTACTT CTTCTAGTCA TAGCAACCGC CTTCGTGGGC TATGTACTTC AJ388449 TCTTTACAAG GAAACCTGAA ATATCGGTGT GGTACTACTT CTCCTATTCA TAACAACCGC CTTCGTGGGC TATTTGCTTC Consensus TCTTTAtAAG GAgACCTGAA ATATcGGTGT gGTACTACTT CTtCTAgTCA TAgCAACCGC CTTCGTGGGC TATgTaCTTC 401 428 AY509823 CGTGGGGTCA AATATCTTTT TGAGGTGC Y10449 CCTGGGGCCA AATATCTTTT TGAGGTGC AJ555553 CGTGGGGTCA AATATCTTTT TGAGGTGC AJ388449 CCTGAGGACA AATATCATTC TGA Consensus CcTGgGG.CA AATATCtTTt TGAggtgc
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890