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- State: published
Acipenser transmontanus – Alignment
1 80 NC_004743 AAAAACCACC GTTGTTAATT CAACTATAAA AACCAATGGC AAACATCCGA AAAACACACC CACTACTTAA AATTATTAAT AB042837 AAAAACCACC GTTGTTAATT CAACTATAAA AACCAATGGC AAACATCCGA AAAACACACC CACTACTTAA AATTATTAAT X14944 ATGGC AAACATCCGA AAAACACACC CACTACTTAA AATTATTAAT AF184107 ATGGC AAACATCCGA AAAACACACC CACTACTTAA AATTATTAAT AF308911 AF404784 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 81 160 NC_004743 GGAGCATTTA TTGATCTCCC CACACCCTCC AACATCTCCG TGTGATGAAA TTTTGGCTCA CTCCTGGGCC TCTGCCTTAT AB042837 GGAGCATTTA TTGATCTCCC CACACCCTCC AACATCTCCG TGTGATGAAA TTTTGGCTCA CTCCTGGGCC TCTGCCTTAT X14944 GGAGCATTTA TTGATCTCCC CACACCCTCC AACATCTCCG TGTGATGAAA TTTTGGCTCA CTCCTGGGCC TCTGCCTTAT AF184107 GGAGCATTTA TTGATCTCCC CACACCCTCC AACATCTCCG TGTGATGAAA TTTTGGCTCA CTCCTGGGCC TCTGCCTTAT AF308911 CTCCTGGGCC TCTGCCTTAT AF404784 CTCCTGGGCC TCTGCCTTAT Consensus .......... .......... .......... .......... .......... .......... CTCCTGGGCC TCTGCCTTAT 161 240 NC_004743 CACACAAATC CTAACAGGAT TATTTCTTGC AATACACTAC ACAGCTGACA TTTCAACAGC CTTCTCCTCT GTCGCCCACA AB042837 CACACAAATC CTAACAGGAT TATTTCTTGC AATACACTAC ACAGCTGACA TTTCAACAGC CTTCTCCTCT GTCGCCCACA X14944 CACACAAATC CTAACAGGAT TATTTCTTGC AATACACTAC ACAGCTGACA TTTCAACAGC CTTCTCCTCT GTCGCCCACA AF184107 CACACAAATC CTAACAGGAT TATTTCTTGC AATACACTAC ACAGCTGACA TTTCAACAGC CTTCTCCTCT GTCGCCCACA AF308911 CACACAAATC CTAACAGGAT TATTTCTTGC AATACACTAC ACAGCTGACA TTTCAACAGC CTTCTCCTCT GTCGCCCACA AF404784 CACACAAATC CTAACAGGAC TATTTCTTGC AATACACTAC ACAGCTGACA TTTCAACAGC CTTCTCCTCT GTCGCCCACA Consensus CACACAAATC CTAACAGGAt TATTTCTTGC AATACACTAC ACAGCTGACA TTTCAACAGC CTTCTCCTCT GTCGCCCACA 241 320 NC_004743 TCTGCCGAGA TGTGAATTAC GGATGACTAA TTCGAAACAT TCATGCAAAC GGGGCCTCTT TCTTCTTCAT CTGCTTGTAT AB042837 TCTGCCGAGA TGTGAATTAC GGATGACTAA TTCGAAACAT TCATGCAAAC GGGGCCTCTT TCTTCTTCAT CTGCTTGTAT X14944 TCTGCCGAGA TGTGAATTAC GGATGACTAA TTCGAAACAT TCATGCAAAC GGGGCCTCTT TCTTCTTCAT CTGCTTGTAT AF184107 TCTGCCGAGA TGTGAATTAC GGATGACTAA TTCGAAACAT TCATGCAAAC GGGGCCTCTT TCTTCTTCAT CTGCTTGTAT AF308911 TCTGCCGAGA TGTGAATTAC GGATGACTAA TTCGAAACAT TCATGCAAAC GGGGCCTCTT TCTTCTTCAT CTGCTTGTAT AF404784 TCTGCCGAGA TGTGAATTAC GGATGACTAA TTCGAAATAT TCATGCAAAC GGGGCCTCCT TCTTCTTCAT CTGCTTATAC Consensus TCTGCCGAGA TGTGAATTAC GGATGACTAA TTCGAAAcAT TCATGCAAAC GGGGCCTCtT TCTTCTTCAT CTGCTTgTAt 321 400 NC_004743 CTTCACGTGG CACGAGGTAT ATACTACGGC TCATACCTCC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCTTGCTTCT AB042837 CTTCACGTGG CACGAGGTAT ATACTACGGC TCATACCTCC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCTTGCTTCT X14944 CTTCACGTGG CACGAGGTAT ATACTACGGC TCATACCTCC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCTTGCTTCT AF184107 CTTCACGTGG CACGAGGTAT ATACTACGGC TCATACCTCC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCTTGCTTCT AF308911 CTTCACGTGG CACGAGGTAT ATACTACGGC TCATACCTCC AAAAAGAAAC CTGAAACATC GGAGTAATCC TCTTGCTTCT AF404784 CTTCACGTGG CACGAGGTAT ATACTATGGC TCATACCTCC AAAAAGAAAC CTGAAACATC GGAGTATTC Consensus CTTCACGTGG CACGAGGTAT ATACTAcGGC TCATACCTCC AAAAAGAAAC CTGAAACATC GGAGTAaTCc tcttgcttct 401 463 NC_004743 CACCATAATA ACCGCCTTCG TAGGATATGT ACTGCCCTGA GGACAAATGT CATTTTGAGG CGC AB042837 CACCATAATA ACCGCCTTCG TAGGATATGT ACTGCCCTGA GGACAAATGT CATTTTGAGG CGC X14944 CACCATAATA ACCGCCTTCG TAGGATATGT ACTGCCCTGA GGACAAATGT CATTTTGAGG CGC AF184107 CACCATAATA ACCGCCTTCG TAGGATATGT ACTGCCCTGA GGACAAATGT CATTTTGAGG CGC AF308911 CACCATAATA AF404784 Consensus caccataata .......... .......... .......... .......... .......... ...
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890