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- State: published
Tinca tinca – Alignment
1 80 AJ555552 ACCCCCTA ATTAAAATTG CTAACGATGC ACTAGTTGAT TTACCAACAC CCTCTAACAT Y10451 ATGGCAAGCC TACGAAAAAC CCACCCCCTA ATTAAAATTG CTAACGATGC ACTAGTTGAT TTACCAACAC CCTCTAACAT AJ555551 ACCCCCTA ATTAAAATTG CTAACGATGC ACTAGTTGAT TTACCAACAC CCTCTAACAT AJ388426 Consensus .......... .......... ..acccccta attaaaattg ctaacgatgc actagttgat ttaccaacac cctctaacat 81 160 AJ555552 CTCAGTATGA TGAAACTTCG GGTCCCTCCT TGGACTATGC TTAATTATCC AAATCTTAAC AGGATTATTT TTAGCTATAC Y10451 CTCAGTATGA TGAAACTTCG GGTCCCTCCT TGGACTATGC TTAATTATCC AAATCTTAAC AGGATTATTT TTAGCTATAC AJ555551 CTCAGTATGA TGAAACTTCG GATCCCTCCT TGGACTATGC TTAATTATCC AAATCTTAAC AGGATTATTT TTAGCTATAC AJ388426 AACTTCG GATCCCTCCT TGGACTATGC TTAATTATCC AAATCTTAAC AGGATTATTT TTAGCTATAC Consensus ctcagtatga tgaAACTTCG GaTCCCTCCT TGGACTATGC TTAATTATCC AAATCTTAAC AGGATTATTT TTAGCTATAC 161 240 AJ555552 ATTACACCTC AGATATTTCA ACCGCATTCT CGTCAGTAAA CCACATTTGC CGTGATGTAA ACTATGGCTG ACTTATTCGT Y10451 ATTACACCTC AGATATTTCA ACCGCATTCT CGTCAGTAAA CCACATTTGC CGTGATGTAA ACTATGGCTG ACTTATTCGT AJ555551 ATTACACCTC AGATATTTCA ACCGCATTCT CGTCAGTAAA CCACATTTGC CGTGATGTAA ACTATGGCTG ACTTATTCGT AJ388426 ATTACACCTC AAATATTTCA ACCGCATTCT CGTCAGTAAA CCACATTTGC CGTGATGTAA ACTATGGCTG ACTTATTCGT Consensus ATTACACCTC AgATATTTCA ACCGCATTCT CGTCAGTAAA CCACATTTGC CGTGATGTAA ACTATGGCTG ACTTATTCGT 241 320 AJ555552 AACTTACACG CTAATGGGGC ATCATTCTTC TTTATCTGCC TTTATATACA TATCGCCCGA GGATTATATT ACGGATCATA Y10451 AACTTACACG CTAATGGGGC ATCATTCTTC TTTATCTGCC TTTATATACA TATCGCCCGA GGATTATATT ACGGATCATA AJ555551 AACTTACACG CTAATGGGGC ATCATTCTTC TTTATCTGCC TTTATATACA TATCGCCCGA GGATTATATT ACGGATCATA AJ388426 AACTTACACG CTAATGGGGC ATCATCCTCC TTTATCTGCC TTTATATACA TATCGCCCGA GGATTATATT ACGGATCATA Consensus AACTTACACG CTAATGGGGC ATCATtCTtC TTTATCTGCC TTTATATACA TATCGCCCGA GGATTATATT ACGGATCATA 321 400 AJ555552 CCTTTACAAA GAGACCTGAA ATATTGGAGT AGTTCTTTTT CTATTAGTAA TAATAACAGC CTTTGTTGGC TACGTCCTGC Y10451 CCTTTACAAA GAGACCTGAA ATATTGGAGT AGTTCTTTTT CTATTAGTAA TAATAACAGC CTTTGTTGGC TACGTCCTGC AJ555551 CCTTTACAAA GAAACCTGAA ATATTGGAGT AGTTCTTTTT CTATTAGTAA TAATAACAGC CTTTGTTGGC TACGTCCTGC AJ388426 CCTTTACAAA AAAACCTGAA ATATGGGATT AGTCCTTTTC CTATTAGTAA TAATAACAGC CTTTGTTGGC TACTTCCTGC Consensus CCTTTACAAA gAaACCTGAA ATATtGGAgT AGTtCTTTTt CTATTAGTAA TAATAACAGC CTTTGTTGGC TACgTCCTGC 401 428 AJ555552 CATGAGGACA AATATCCTTT TGAGGCGC Y10451 CATGAGGACA AATATCCTTT TGAGGCGC AJ555551 CATGAGGACA AATATCCTTT TGAGGCGC AJ388426 CATGAGGACA AATATCATTC TGA Consensus CATGAGGACA AATATCcTTt TGAggcgc
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890