Views
- State: published
Sardina pilchardus – Alignment
1 80 AF472582 ATGGCAAGCC TGCGAAAGAC TCACCCACTT ATAAAAATCG CCAACGACGC ACTAGTCGAC CTCCCGGCCC CCTCGAACAT AF291854 AF291855 AF291857 AF291858 AF291859 AF291860 AF291856 AY394038 AY394044 AY394040 AY394039 AY394041 AY394043 AY394042 Consensus 81 160 AF472582 CTCGGTCTGA TGAAACTTCG GATCGCTTCT TGGCCTCTGT CTAGCGGCCC AGATTCTGAC AGGGTTGTTC TTAGCCATGC AF291854 CTTCG GATCGCTTCT TGGCCTCTGT CTAGCGGCCC AGATTCTGAC AGGGTTGTTC TTAGCCATGC AF291855 CTTCG GATCGCTTCT TGGCCTCTGT CTAGCGGCCC AGATTCTGAC AGGGTTGTTC TTAGCCATGC AF291857 CTTCG GATCGCTTCT TGGCCTCTGT CTAGCGGCCC AGATTCTGAC AGGGTTGTTC TTAGCCATGC AF291858 CTTCG GATCGCTTCT TGGCCTCTGT CTAGCGGCCC AGATTCTGAC AGGGTTGTTC TTAGCCATGC AF291859 CTTCG GATCGCTTCT TGGCCTCTGT CTAGCGGCCC AGATTCTGAC AGGGTTGTTC TTAGCCATGC AF291860 CTTCG GATCGCTTCT TGGCCTCTGT CTAGCGGCCC AGATTCTGAC AGGGTTGTTC TTAGCCATGC AF291856 CTTCG GATCGCTTCT TGGCCTCTGT CTAGCGGCCC AGATTCTGAC AGGGTTGTTC TTAGCCATGC AY394038 AY394044 AY394040 AY394039 AY394041 AY394043 AY394042 Consensus ..... .......... .......... .......... .......... .......... .......... 161 240 AF472582 ACTACACCTC TGACATCGCA ACCGCCTTCT CTTCTGTTGC CCACATTTGT CGTGACGTAA ACTACGGATG ACTGATTCGA AF291854 ACTACACCTC TGACATCGCA ACCGCCTTCT CTTCTGTTGC CCACATTTGT CGTGACGTAA ACTACGGATG ACTGATTCGA AF291855 ACTACACCTC TGACATCGCA ACCGCCTTCT CTTCTGTTGC CCACATTTGC CGTGACGTAA ACTACGGATG ACTGATTCGA AF291857 ACTACACCTC TGACATCGCA ACCGCCTTCT CTTCTGTTGC CCACATTTGT CGTGACGTAA ACTACGGATG ACTGATTCGA AF291858 ACTACACCTC TGACATCGCA ACCGCCTTCT CTTCTGTTGC CCACATTTGT CGTGACGTAA ACTACGGATG ACTGATTCGA AF291859 ACTACACCTC TGACATCGCA ACCGCCTTCT CTTCTGTTGC CCACATTTGT CGTGACGTAA ACTACGGATG ACTGATTCGA AF291860 ACTACACCTC TGACATCGCA ACCGCCTTCT CTTCTGTTGC CCACATTTGT CGTGACGTAA ACTACGGATG ACTGATTCGA AF291856 ACTACACCTC TGACATCGCA ACCGCCTTCT CTTCTGTTGC CCACATTTGT CGTGACGTAA ACTACGGATG ATTGATTCGA AY394038 AY394044 AY394040 AY394039 AY394041 AY394043 AY394042 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 241 320 AF472582 AGTATGCACG CAAATGGAGC ATCTTTTTTC TTTATTTGTA TTTACGCCCA CATTGGGCGA GGGCTCTATT ATGGCTCCTA AF291854 AGTATGCACG CAAATGGAGC ATCTTTTTTC TTTATTTGTA TTTACGCCCA CATTGGGCGA GGGCTCTATT ATGGCTCCTA AF291855 AGTATGCACG CAAATGGAGC ATCTTTTTTC TTTATTTGTA TTTACGCCCA CATTGGGCGA GGGCTCTATT ATGGCTCCTA AF291857 AGTATGCACG CAAATGGGGC ATCTTTTTTC TTTATTTGTA TTTACGCCCA CATTGGGCGA GGGCTCTATT ATGGCTCCTA AF291858 AGTATGCACG CAAATGGGGC ATCTTTTTTC TTTATTTGTA TTTACGCCCA CATTGGGCGA GGGCTCTATT ATGGCTCCTA AF291859 AGTATGCACG CAAATGGAGC ATCTTTTTTC TTTATTTGTA TTTACGCCCA CATTGGGCGA GGGCTCTATT ATGGCTCCTA AF291860 AGTATGCACG CAAATGGAGC ATCTTTTTTC TTTATTTGTA TTTATGCCCA CATTGGGCGA GGGCTCTATT ATGGCTCCTA AF291856 AGTATGCACG CAAATGGAGC ATCTTTTTTC TTTATTTGTA TTTACGCCCA CATTGGGCGA GGGCTCTATT ATGGCTCCTA AY394038 GCTCTATT ATGGCTCCTA AY394044 GCTCTATT ATGGCTCCTA AY394040 GCTCTATT ATGGCTCCTA AY394039 GCTCTATT ATGGCTCCTA AY394041 GCTCTATT ATGGCTCCTA AY394043 GCTCTATT ATGGCTCCTA AY394042 GCTCTATT ATGGCTCCTA Consensus .......... .......... .......... .......... .......... .......... ..GCTCTATT ATGGCTCCTA 321 400 AF472582 TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGT TATGTCTTAC AF291854 TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGT TATGTCTTAC AF291855 TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGT TATGTCTTAC AF291857 TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGT TATGTCTTAC AF291858 TCTCTACAAG GAGACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGT TATGTCTTAC AF291859 TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGT TATGTTTTAC AF291860 TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGT TATGTCTTAC AF291856 TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGT TATGTCTTAC AY394038 TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGT TATGTCTTAC AY394044 TCTCTACAAG GAAACGTGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGT TATGTCTTAC AY394040 TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGC TATGTCTTAC AY394039 TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGC TATGTCTTAC AY394041 TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTCTGGTCA TGATAACTGC CTTTGTTGGA TATGTCTTAC AY394043 TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGT TATGTTTTAC AY394042 TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC TTTTGTTGGT TATGTCTTAC Consensus TCTCTACAAG GAAACATGAA ACATTGGAGT TGTCCTCCTT CTTTTGGTCA TGATAACTGC CTTTGTTGGt TATGTcTTAC 401 428 AF472582 CATGAGGCCA AATGTCCTTC TGAGGGGC AF291854 CA AF291855 CA AF291857 CA AF291858 CA AF291859 CA AF291860 CA AF291856 CA AY394038 CATGA AY394044 CATGA AY394040 CATGA AY394039 CATGA AY394041 CATGA AY394043 CATGA AY394042 CATGA Consensus CAtga
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890