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- State: published
Scomber japonicus – Alignment
1 80 AB018996 ATGGCAAGCC TTCGAAAAAC CCACCCACTG CTAAAAATTG CTAACGACGC ACTAGTCGAC CTTCCAAGCC CCGCTAACAT AB032517 ATGGCAAGCC TTCGAAAAAC CCACCCACTG CTAAAAATTG CTAACGACGC ACTAGTCGAC CTTCCAAGCC CCGCTAACAT AB032516 ATGGCAAGCC TTCGAAAAAC CCACCCACTG CTAAAAATTG CTAACGACGC ACTAGTCGAC CTTCCAAGCC CCGCTAACAT AB032515 ATGGCAAGCC TTCGAAAAAC CCACCCACTG CTAAAAATTG CTAACGACGC ACTAGTCGAC CTTCCAAGCC CCGCTAACAT L11544 AF032707 AF032708 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 81 160 AB018996 TTCAGTATGA TGAAACTTCG GCTCACTGCT TGGTCTCTGC CTAATTTCTC AAATTCTCAC AGGACTTTTC CTCGCAATAC AB032517 TTCAGTATGA TGAAACTTCG GCTCACTGCT TGGTCTCTGC CTAATTTCTC AAATTCTCAC AGGACTTTTC CTCGCAATAC AB032516 TTCAGTATGA TGAAACTTCG GCTCACTGCT TGGTCTCTGC CTAATTTCTC AAATTCTCAC AGGACTTTTC CTCGCAATAC AB032515 TTCAGTATGA TGAAACTTCG GCTCACTGCT TGGTCTCTGC CTAATTTCTC AAATTCTCAC AGGACTTTTC CTCGCAATAC L11544 TTCTCAC AGGACTTTTC CTCGCAATAC AF032707 AF032708 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 161 240 AB018996 ACTACACCCC CGATGTTGAG TCAGCATTCG ACTCAGTCGC CCATATTTGC CGAGACGTAA ACTTCGGATG ACTAATCCGT AB032517 ACTACACCCC CGATGTTGAG TCAGCATTCG ACTCAGTCGC CCATATTTGC CGAGACGTAA ACTTCGGATG ACTAATCCGT AB032516 ACTACACCCC CGATGTTGAG TCAGCATTCG ACTCAGTCGC CCATATTTGC CGAGACGTAA ACTTCGGATG ACTAATCCGT AB032515 ACTACACCCC CGATGTTGAG TCAGCATTCG ACTCAGTCGC CCATATTTGC CGAGACGTAA ACTTCGGATG ACTAATCCGT L11544 ACTACACGCC CGATGTTGAG TCAGCATTCG ACTCAGTCGC CCATATTTGC CGGGACGTAA ACTTCGGATG ACTAATCCGT AF032707 AF032708 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 241 320 AB018996 AATCTACATG CAAACGGCGC CTCCTTCTTC TTCATTTGCA TTTATCTCCA CATCGGGCGA GGCCTTTACT ACGGCTCCTA AB032517 AATCTACATG CAAACGGCGC CTCCTTCTTC TTCATTTGCA TTTATCTCCA CATCGGGCGA GGCCTTTACT ACGGCTCCTA AB032516 AATCTACATG CAAACGGCGC CTCCTTCTTC TTCATTTGCA TTTATCTCCA CATCGGGCGA GGCCTTTACT ACGGCTCCTA AB032515 AATCTACATG CAAACGGCGC CTCCTTCTTC TTCATTTGCA TTTATCTCCA CATCGGGCGA GGCCTTTACT ACGGCTCCTA L11544 AACCTACATG CAAACGGCGC CTCCTTCTTC TTCATTTGCA TTTATCTCCA CATCGGGCGA GGTCTTTACT ACGGTTCCTA AF032707 AF032708 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 321 400 AB018996 CCTTTTCATG GAAACATGAA ACATTGGTGT GGTTCTTCTC CTCCTCGTAA TAATAACCGC ATTCGTCGGC TACGTCCTTC AB032517 CCTTTTCATG GAAACATGAA ACATTGGTGT GGTTCTTCTC CTCCTCGTAA TAATAACCGC ATTCGTCGGC TACGTCCTTC AB032516 CCTTTTCATG GAAACATGAA ACATTGGTGT GGTTCTTCTC CTCCTCGTAA TAATAACCGC ATTCGTCGGC TACGTCCTTC AB032515 CCTTTTCATG GAAACATGAA ACATTGGTGT GGTTCTTCTC CTCCTCGTAA TAATAACCGC ATTCGTCGGC TACGTCCTTC L11544 CCTTTTTATG GAGACATGAA ACATTGGTGT GGTTCTTCTC CTCCTCGTAA TAATAACCGC ATTCGTCGGC TACGTCCTTC AF032707 CATG GAAACATGAA ACATTGGTGT GGTTCTTCTC CTCCTCGTAA TAATAACCGC ATTCGTCGGC TACGTCCTTC AF032708 ATG GAAACATGAA ACATTGGTGT GGTTCTTCTC CTCCTCGTAA TAATAACCGC ATTCGTCGGC TACGTCCTTC Consensus ......cATG GAaACATGAA ACATTGGTGT GGTTCTTCTC CTCCTCGTAA TAATAACCGC ATTCGTCGGC TACGTCCTTC 401 428 AB018996 CCTGAGGCCA AATGTCCTTC TGAGGGGC AB032517 CCTGAGGCCA AATGTCCTTC TGAGGGGC AB032516 CCTGAGGCCA AATGTCCTTC TGAGGGGC AB032515 CCTGAGGCCA AATGTCCTTC TGAGGGGC L11544 CCTGAGGTCA AATGTCCTTC TGAGGGGC AF032707 CCTGAGGCCA AATGTCCTTC TGAGGGGC AF032708 CCTGAGGCCA AATGTCCTTC TGAGGGGC Consensus CCTGAGGcCA AATGTCCTTC TGAGGGGC
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890