Skip to content

FischDB - die Fischdatenbank

Personal tools
You are here: Home » Fischkatalog » Sebastes alutus » alignment
Views
  • State: published

Sebastes alutus – Alignment

 


            1                                                                                    80
  AB096111          TC TACGAAAGAC ACACCCTCTC CTCAAAATCG CAAACAATGC CCTAGTTGAC CTACCCGCCC CCTCAAATAT
  AF030713  ATGGCAAGTC TACGAAAGAC ACACCCTCTC CTCAAAATCG CAAACAATGC CCTAGTTGAC CTACCCGCCC CCTCAAATAT
 Consensus  ........TC TACGAAAGAC ACACCCTCTC CTCAAAATCG CAAACAATGC CCTAGTTGAC CTACCCGCCC CCTCAAATAT

            81                                                                                  160
  AB096111  TTCAGTGTGA TGAAACTTCG GCTCTCTCTT AGGACTCTGC TTGATTATTC AAATCCTTAC AGGACTATTT TTAGCCATGC
  AF030713  TTCAGTGTGA TGAAACTTCG GCTCTCTCTT AGGACTCTGC TTGATTATTC AAATCCTTAC AGGACTATTT TTAGCCATGC
 Consensus  TTCAGTGTGA TGAAACTTCG GCTCTCTCTT AGGACTCTGC TTGATTATTC AAATCCTTAC AGGACTATTT TTAGCCATGC

            161                                                                                 240
  AB096111  ACTACACCTC TGATATTGCT ACGGCTTTTT CTTCCGTTGC TCATATTTGC CGAGACGTAA ATTACGGGTG ATTCATCCGA
  AF030713  ACTACACCTC TGATATTGCT ACGGCTTTTT CTTCCGTTGC TCATATTTGC CGAGACGTAA ATTACGGGTG ATTCATCCGA
 Consensus  ACTACACCTC TGATATTGCT ACGGCTTTTT CTTCCGTTGC TCATATTTGC CGAGACGTAA ATTACGGGTG ATTCATCCGA

            241                                                                                 320
  AB096111  AACCTTCACG CCAACGGTGC ATCCTTCTTC TTTGTATGCA TCTATGCCCA CATTGGCCGC GGACTTTACT ACGGCTCATA
  AF030713  AACCTTCACG CCAACGGTGC ATCCTTCTTC TTTGTATGCA TCTATGCCCA CATTGGCCGC GGACTTTACT ACGGCTCATA
 Consensus  AACCTTCACG CCAACGGTGC ATCCTTCTTC TTTGTATGCA TCTATGCCCA CATTGGCCGC GGACTTTACT ACGGCTCATA

            321                                                                                 400
  AB096111  CCTCTATAAA GAAACATGAA ACATCGGAGT AGTTCTTCTA CTTCTAGTTA TAATAACTGC TTTCGTCGGT TATGTATTAC
  AF030713  CCTCTATAAA GAAACATGAA ACATCGGAGT AGTTCTTCTA CTTCTAGTTA TAATAACTGC TTTCGTCGGT TATGTATTAC
 Consensus  CCTCTATAAA GAAACATGAA ACATCGGAGT AGTTCTTCTA CTTCTAGTTA TAATAACTGC TTTCGTCGGT TATGTATTAC

            401                        428
  AB096111  CCTGAGGCCA AATGTCCTTT TGAGGTGC
  AF030713  CCTGAGGCCA AATGTCCTTT TGAGGTGC
 Consensus  CCTGAGGCCA AATGTCCTTT TGAGGTGC

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890