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Thunnus alalunga – Alignment
1 80 AB176812 NC_005317 AAAAACCACC GTTGTAATTC AACTACAAGA ACCCTAATGG CAAGCCTCCG AAAAACTCAC CCGCTACTAA AAATCGCTAA AB101291 AAAAACCACC GTTGTAATTC AACTACAAGA ACCCTAATGG CAAGCCTCCG AAAAACTCAC CCGCTACTAA AAATCGCTAA AB098100 TCGC C-GTTACTAA AAATCGCTAA AB098099 A D63491 L11556 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 81 160 AB176812 NC_005317 CGACGCACTA GTTGACCTCC CTACCCCCTC TAATATCTCT GCATGATGAA ACTTTGGCTC ACTACTTGGC CTTTGCCTTA AB101291 CGACGCACTA GTTGACCTCC CTACCCCCTC TAATATCTCT GCATGATGAA ACTTTGGCTC ACTACTTGGC CTTTGCCTTA AB098100 CGACGCACTA GTTGACCTCC CTACCCCCTC TAATATCTCT GCATGATGAA ACTTTGGCTC ACTACTTGGC CTTTGCCTTA AB098099 CGACGCACTA GTTGACCTCC CTACCCCCTC TAATATCTCT GCATGATGAA ACTTTGGCTC ACTACTTGGC CTTTGCCTTA D63491 GGCTC ACTACTTGGC CTTTGCCTTA L11556 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 161 240 AB176812 NC_005317 TTTCTCAAAT CCTTACAGGA CTATTCCTCG CAATACACTA TACCCCTGAT GTCGAATCAG CCTTCGCCTC AGTAGCCCAC AB101291 TTTCTCAAAT CCTTACAGGA CTATTCCTCG CAATACACTA TACCCCTGAT GTCGAATCAG CCTTCGCCTC AGTAGCCCAC AB098100 TTTCTCAAAT CCTTACAGGA CTATTCCTCG CAATACACTA TACCCCTGAT GTCGAATCAG CCTTCGCCTC AGTAGCCCAC AB098099 TTTCTCAAAT CCTTACAGGA CTATTCCTCG CAATACACTA TACCCCTGAT GTCGAATCAG CCTTCGCCTC AGTAGCCCAC D63491 TTTCTCAAAT CCTTACAGGA CTATTCCTCG CAATACACTA CACCCCTGAT GTCGAATCAG CCTTCGCCTC AGTAGCCCAC L11556 T CCTTACAGGA CTATTCCTCG CAATACACTA CACCCCTGAT GTCGAATCAG CCTTTGCCTC AGTAGCCCAT Consensus .........t ccttacagga ctattcctcg caatacacta .acccctgat gtcgaatcag cctt.gcctc agtagccca. 241 320 AB176812 NC_005317 ATTTGCCGAG ATGTCAACTT CGGTTGACTC ATCCGGAACC TCCACGCAAA CGGGGCCTCT TTCTTCTTTA TCTGCATCTA AB101291 ATTTGCCGAG ATGTCAACTT CGGTTGACTC ATCCGGAACC TCCACGCAAA CGGGGCCTCT TTCTTCTTTA TCTGCATCTA AB098100 ATTTGCCGAG ATGTCAACTT CGGTTGACTC ATCCGGAACC TCCACGCAAA CGGGGCCTCT TTCTTCTTTA TCTGCATCTA AB098099 ATTTGCCGAG ATGTCAACTT CGGTTGACTC ATCCGGAACC TCCACGCAAA CGGGGCCTCT TTCTTCTTTA TCTGCATCTA D63491 ATTTGCCGAG ATGTCAACTT CGGTTGACTC ATCCGGAACC TCCACGCAAA CGGGGCCTCT TTCTTCTTTA TCTGCATCTA L11556 ATCTGCCGAG ATGTAAACTT CGGATGACTC ATCCGAAACC TCCACGCAAA CGGAGCATCT TTCTTCTTTA TCTGCATCTA Consensus at.tgccgag atgt.aactt cgg.tgactc atccg.aacc tccacgcaaa cgg.gc.tct ttcttcttta tctgcatcta 321 400 AB176812 G CTCTTACCTG TACCAAGAAA CATGAAACAT CGGAGTAGTA CTCCTACTTC NC_005317 CTTCCACATC GGCCGAGGCC TTTACTACGG CTCTTACCTG TACAAAGAAA CATGAAACAT CGGAGTAGTA CTCCTACTTC AB101291 CTTCCACATC GGCCGAGGCC TTTACTACGG CTCTTACCTG TACAAAGAAA CATGAAACAT CGGAGTAGTA CTCCTACTTC AB098100 CTTCCACATC GGCCGAGGCC TTTACTACGG CTCTTACCTG TATAAAGAAA CATGAAACAT CGGAGTAGTA CTCCTACTTC AB098099 CTTCCACATC GGCCGAGGCC TTTACTACGG CTCTTACCTG TACAAAGAAA CATGAAACAT CGGAGTAGTA CTCCTACTTC D63491 CTTCCACATC GGCCGAGGCC TTTACTACGG CTCTTACCTG TACAAAGAAA CATGAAACAT CGGAGTAGTA CTCCTACTTC L11556 CTTCCACATC GGCCGAGGCC TTTACTATGG CTCCTACCTA TACAAAGAAA CATGAAACAT TGGAGTAGTT CTCCTACTTC Consensus cttccacatc ggccgaggcc tttacta.gG CTCtTACCTg TACaAAGAAA CATGAAACAT cGGAGTAGTa CTCCTACTTC 401 464 AB176812 TAGTTATGAT GACCGCCTTC GTTGGCTACG TCCTTCCCTG AGGACAAATG TCCTTCTGAG GAGC NC_005317 TAGTTATGAT GACCGCCTTC GTTGGCTACG TCCTTCCCTG AGGACAAATG TCCTTCTGAG GAGC AB101291 TAGTTATGAT GACCGCCTTC GTTGGCTACG TCCTTCCCTG AGGACAAATG TCCTTCTGAG GAGC AB098100 TAGTTATGAT GACCGCCTTC GTTGGCTACG TCCTTCCCTG AGGACAAATG TCCTTCTGAG GAGC AB098099 TAGTTATGAT GACCGCTTTC GTTGGCTACG TCCTTCCCTG AGGACAAATG TCCTTCTGAG GAGC D63491 TAGTTATGAT GACCGCCTTC GTTGGCT L11556 TNGTTATGAT GACCGCCTTC GTTGGCTACG TCCTTCCCTG AGGACAAATG TCCTTCTGAG GAGC Consensus TaGTTATGAT GACCGCCTTC GTTGGCTacg tccttccctg aggacaaatg tccttctgag gagc
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890