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  • State: published

Mugil cephalus – Alignment

 


            1                                                                                    80
 NC_003182  AAAAACCACC GTTGTAACTC AACTACAGGA ACGTGTAATG ACCACCATCC GGAAAAACCA CCCCTTGTTC AAGGCTGCGA
  AP002930  AAAAACCACC GTTGTAACTC AACTACAGGA ACGTGTAATG ACCACCATCC GGAAAAACCA CCCCTTGTTC AAGGCTGCGA
    Z70776                                                                CCA CCCCCTGTTC AAGGCTGCGA
 Consensus  aaaaaccacc gttgtaactc aactacagga acgtgtaatg accaccatcc ggaaaaaCCA CCCCtTGTTC AAGGCTGCGA

            81                                                                                  160
 NC_003182  ACTCCGCGCT AATTGACCTC CCAGCCCCAG CTAGCCTCTC TTCACTATGA AACTTTGGCT CACTCCTTGG GCTATGCTTA
  AP002930  ACTCCGCGCT AATTGACCTC CCAGCCCCAG CTAGCCTCTC TTCACTATGA AACTTTGGCT CACTCCTTGG GCTATGCTTA
    Z70776  ACTCCGCGCT AATTGACCTC CCAGCCCCAG CCAGCCTCTC TTCATTATGA AACTTTGGCT CACTCCTTGG ACTATGTTTA
 Consensus  ACTCCGCGCT AATTGACCTC CCAGCCCCAG CtAGCCTCTC TTCAcTATGA AACTTTGGCT CACTCCTTGG gCTATGcTTA

            161                                                                                 240
 NC_003182  ATTTCACAAA TTGCAACAGG CCTATTCCTT GCCATACACT ACGCCCCTGA AACCTCATCC GCCTTTGCCT CCGTAGCCCA
  AP002930  ATTTCACAAA TTGCAACAGG CCTATTCCTT GCCATACACT ACGCCCCTGA AACCTCATCC GCCTTTGCCT CCGTAGCCCA
    Z70776  ATCTCACAGA TTGCAACAGG CCTATTCCTT GCCATACACT ACGCCCCTGA AACCTCATCT GCCTTTGCCT CCGTAGCCCA
 Consensus  ATtTCACAaA TTGCAACAGG CCTATTCCTT GCCATACACT ACGCCCCTGA AACCTCATCc GCCTTTGCCT CCGTAGCCCA

            241                                                                                 320
 NC_003182  CATCTGCCGA GACGTAAACT ACGGCTGACT GATCCGCAAC ATACACGCTA ATGGTGCATC TTTTTTCTTT GTCTGCATTT
  AP002930  CATCTGCCGA GACGTAAACT ACGGCTGACT GATCCGCAAC ATACACGCTA ATGGTGCATC TTTTTTCTTT GTCTGCATTT
    Z70776  CATCTGCCGA GACGTAAACT ACGGCTGACT GATCCGCAAC ATACACGCTA ATGGCGCATC TTTTTTCTTT GTCTGCATCT
 Consensus  CATCTGCCGA GACGTAAACT ACGGCTGACT GATCCGCAAC ATACACGCTA ATGGtGCATC TTTTTTCTTT GTCTGCATtT

            321                                                                                 400
 NC_003182  ACATTCACAT CGGACGTGGC CTTTATTACG GCTCGTACCT ATACAAGGAA ACTTGAAACA TTGGAGTCGT CCTCCTCCTC
  AP002930  ACATTCACAT CGGACGTGGC CTTTATTACG GCTCGTACCT ATACAAGGAA ACTTGAAACA TTGGAGTCGT CCTCCTCCTC
    Z70776  ATATTCACAT CGGACGTGGC CTTTACTAC                                                        
 Consensus  AcATTCACAT CGGACGTGGC CTTTAtTACg gctcgtacct atacaaggaa acttgaaaca ttggagtcgt cctcctcctc

            401                                                                 465
 NC_003182  CTAGTGATAA TAACCGCATT TGTTGGATAT GTCCTCCCCT GAGGACAAAT ATCCTTCTGA GGTGC
  AP002930  CTAGTGATAA TAACCGCATT TGTTGGATAT GTCCTCCCCT GAGGACAAAT ATCCTTCTGA GGTGC
    Z70776                                                                         
 Consensus  ctagtgataa taaccgcatt tgttggatat gtcctcccct gaggacaaat atccttctga ggtgc

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890