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  • State: published

Lophius litulon – Alignment

 


            1                                                                                    80
 NC_004380  AAAAACCACC GTTGTTATTC AACTACAAGA ACCCTAATGG CAAGCCTCCG TAAAACACAC CCCCTATTAA AAATTGCTAA
  AP004414  AAAAACCACC GTTGTTATTC AACTACAAGA ACCCTAATGG CAAGCCTCCG TAAAACACAC CCCCTATTAA AAATTGCTAA
  AY091555                 TTATTC AACTACAAGA ACCCTAATGA CAAGCCTCCG TAAAACACAC CCCCTATTAA AAATTGCTAA
  AY091554                 TTATTC AACTACAAGA ACCCTAATGG CAAGCCTCCG TAAAACACAT CCCCTATTAA AAATTGCTAA
  AY091553                 TTATTC AACTACAAGA ACCCTAATGG CAAGCCTCCG TAAAACACAT CCCCTATTAA AAATTGCTAA
  AP004413  AAAAACCACC GTTGT-ATTC AACTATAAGA GCACCCATGA CCAGCCTACG AAAAACACAC CCCGTACTAA AAATTGCCAA
  AY292608                                                                                         
 Consensus  .......... ....ttattc aactacaaga accctaatg. caagcctccg taaaacacac cccctattaa aaattgctaa

            81                                                                                  160
 NC_004380  TGACGCCCTA GTAGACCTTC CCGCCCCCTC AAACATCTCT GCGTGATGGA ACTTTGGCTC CTTACTAGCA CTCTGCTTAA
  AP004414  TGACGCCCTA GTAGACCTTC CCGCCCCCTC AAACATCTCT GCGTGATGGA ACTTTGGCTC CTTACTAGCA CTCTGCTTAA
  AY091555  TGACGCTTTA GTAGACCTAC CCGCCCCCTC CAATATCTCT GCATGATGGA ACTTTGGCTC CTTACTAGCG CTCTGCTTAA
  AY091554  TGACGCTTTA GTAGACCTAC CCGCCCCCTC TAATATCTCT GCATGATGGA ACTTTGGCTC CTTACTAGCA CTCTGCTTAA
  AY091553  TGACGCTTTA GTAGACCTAC CCGCCCCCTC TAATATCTCT GCATGATGGA ACTTTGGCTC CTTACTAGCA CTCTGCTTAA
  AP004413  CGATGCTCTG GTAGACCTCC CAGCCCCTTC TAACATCTCA ATTTGATGGA ACTTTGGCTC CCTACTCGGA CTATGCTTAA
  AY292608                                    AACATCTCT GCGTGATGGA ACTTTGGCTC CTTACTAGCA CTCTGCTTAA
 Consensus  tgacgct.ta gtagacct.c ccgccccctc .AAcATCTCt gcgTGATGGA ACTTTGGCTC CtTACTaGca CTcTGCTTAA

            161                                                                                 240
 NC_004380  TTGCCCAAGT CTTAACGGGA CTATTTCTAG CCATACACTA CACCTCTGAT ATCGCCACAG CTTTCTCCTC AGTAGCACAC
  AP004414  TTGCCCAAGT CTTAACGGGA CTATTTCTAG CCATACACTA CACCTCTGAT ATCGCCACAG CTTTCTCCTC AGTAGCACAC
  AY091555  TTGCCCAAAT CTTAACAGGA CTATTTCTAG CCATACACTA CACCTCTGAT ATCGCCACAG CTTTCTCCTC AGTAGCACAC
  AY091554  TTACCCAAAT CTTAACAGGA CTATTTCTAG CTATACACTA CACCTCTGAT ATCGCCACAG CTTTCTCCTC AGTAGCACAC
  AY091553  TTGCCCAAAT CTTAACAGGA CTATTTCTAG CTATACACTA CACCTCTGAT ATCGCCACAG CTTTCTCCTC AGTAGCACAC
  AP004413  TTATCCAAAT CCTCACCGGA CTATTTCTCG CCATACATTA CACCTCTGAC ATTGCTACCG CCTTTTCCTC AGTAGCACAC
  AY292608  TTGCCCAAGT CTTAACGGGA CTATTTCTAG CCATACACTA CACCTCTGAT ATCGCCACAG CTTTCTCCTC AGTAGCACAC
 Consensus  TTgcCCAAaT CtTaACgGGA CTATTTCTaG CcATACAcTA CACCTCTGAt ATcGCcACaG CtTTcTCCTC AGTAGCACAC

            241                                                                                 320
 NC_004380  ATCTGCCGAG ACGTAAACTA CGGATGACTG ATCCGCAACC TTCATGCCAA CGGCGCCTCC TTCTTCTTTA TTTGCATCTA
  AP004414  ATCTGCCGAG ACGTAAACTA CGGATGACTG ATCCGCAACC TTCATGCCAA CGGCGCCTCC TTCTTCTTTA TTTGCATCTA
  AY091555  ATCTGTCGAG ACGTAAACTA CGGATGACTA ATCCGCAACC TTCATGCCAA TGGGGCCTCC TTCTTCTTTA TTTGCATCTA
  AY091554  ATCTGTCGAG ACGTAAACTA CGGATGACTC ATCCGCAACC TTCATGCCAA CGGAGCCTCC TTCTTCTTTA TTTGCATCTA
  AY091553  ATCTGTCGAG ACGTAAACTA CGGATGACTC ATCCGCAACC TTCATGCCAA CGGAGCCTCC TTCTTCTTTA TTTGCATCTA
  AP004413  ATCTGCCGAG ATGTCAATTA TGGCTGGCTT ATCCGAAACC TCCATGCAAA CGGAGCCTCC TTTTTCTTTA TTTGCATTTA
  AY292608  ATCTGCCGAG ACGTAAACTA CGGATGACTG ATCCGCAACC TTCATGCCAA CGGCGCCTCC TTCTTCTTTA TTTGCATCTA
 Consensus  ATCTGcCGAG AcGTaAAcTA cGGaTGaCTg ATCCGcAACC TtCATGCcAA cGGcGCCTCC TTcTTCTTTA TTTGCATcTA

            321                                                                                 400
 NC_004380  CATGCACATT GGACGAGGCT TATACTACGG CTCCTACCTC TACAAAGAAA CATGAAACAT CGGAGTGGTC CTTCTCCTCC
  AP004414  CATGCACATT GGACGAGGCT TATACTACGG CTCCTACCTC TACAAAGAAA CATGAAACAT CGGAGTGGTC CTTCTCCTCC
  AY091555  TATGCATATT GGACGAGGCT TGTATTACGG CTCTTACCTC TACAAAGAAA CATGAAACGT TGGAGTAGTC CTTCTCCTCC
  AY091554  CATGCATATC GGACGAGGAT TATATTACGG CTCCTACCTC TACAAAGAAA CATGAAACAT TGGGGTAGTA CTTCTCCTCC
  AY091553  CATGCATATC GGACGAGGAT TATATTACGG CTCCTACCTC TACAAAGAAA CATGAAACAT TGGGGTAGTA CTTCTCCTCC
  AP004413  CATGCACATC GGACGCGGCC TTTACTATGG ATCGTACCTC TATAAAGAAA CCTGAAATAT CGGAGTTATC CTTCTACTAC
  AY292608  CATGCACATT GGGCGAGGCT TATACTACGG CTCCTACCTC TACAAAGAAA CATGAAACAT CGGAGTGGTC CTTCTCCTCC
 Consensus  cATGCAcATt GGaCGaGGct TaTAcTAcGG cTCcTACCTC TAcAAAGAAA CaTGAAAcaT cGGaGTggTc CTTCTcCTcC

            401                                                                464
 NC_004380  TGGTTATAAT AACAGCATTC GTAGGCTATG TACTACCCTG GGGCCAGATA TCCTTCTGAG GCGC
  AP004414  TGGTTATAAT AACAGCATTC GTAGGCTATG TACTACCCTG GGGCCAGATA TCCTTCTGAG GCGC
  AY091555  TAGTTATAAT GACAGCATTC GTAGGCTACG TTCTACCG                             
  AY091554  TGGTTATAAT AACAGCATTC GTAGGCTATG TACTACCG                             
  AY091553  TGGTTATAAT AACAGCATTC GTAGGCTATG TACTACCG                             
  AP004413  TCGTCATAGC CACCGCATTC GTTGGTTATG TCCTACCCTG AGGGCAAATA TCATTCTGAG GCGC
  AY292608  TGGTTATAAT AACAGCATTT GTAGGGTAT                                       
 Consensus  TgGTtATAat aACaGCATTc GTaGGcTAtg t.ctacc... .......... .......... ....

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890