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- State: published
Lophius litulon – Alignment
1 80 NC_004380 AAAAACCACC GTTGTTATTC AACTACAAGA ACCCTAATGG CAAGCCTCCG TAAAACACAC CCCCTATTAA AAATTGCTAA AP004414 AAAAACCACC GTTGTTATTC AACTACAAGA ACCCTAATGG CAAGCCTCCG TAAAACACAC CCCCTATTAA AAATTGCTAA AY091555 TTATTC AACTACAAGA ACCCTAATGA CAAGCCTCCG TAAAACACAC CCCCTATTAA AAATTGCTAA AY091554 TTATTC AACTACAAGA ACCCTAATGG CAAGCCTCCG TAAAACACAT CCCCTATTAA AAATTGCTAA AY091553 TTATTC AACTACAAGA ACCCTAATGG CAAGCCTCCG TAAAACACAT CCCCTATTAA AAATTGCTAA AP004413 AAAAACCACC GTTGT-ATTC AACTATAAGA GCACCCATGA CCAGCCTACG AAAAACACAC CCCGTACTAA AAATTGCCAA AY292608 Consensus .......... ....ttattc aactacaaga accctaatg. caagcctccg taaaacacac cccctattaa aaattgctaa 81 160 NC_004380 TGACGCCCTA GTAGACCTTC CCGCCCCCTC AAACATCTCT GCGTGATGGA ACTTTGGCTC CTTACTAGCA CTCTGCTTAA AP004414 TGACGCCCTA GTAGACCTTC CCGCCCCCTC AAACATCTCT GCGTGATGGA ACTTTGGCTC CTTACTAGCA CTCTGCTTAA AY091555 TGACGCTTTA GTAGACCTAC CCGCCCCCTC CAATATCTCT GCATGATGGA ACTTTGGCTC CTTACTAGCG CTCTGCTTAA AY091554 TGACGCTTTA GTAGACCTAC CCGCCCCCTC TAATATCTCT GCATGATGGA ACTTTGGCTC CTTACTAGCA CTCTGCTTAA AY091553 TGACGCTTTA GTAGACCTAC CCGCCCCCTC TAATATCTCT GCATGATGGA ACTTTGGCTC CTTACTAGCA CTCTGCTTAA AP004413 CGATGCTCTG GTAGACCTCC CAGCCCCTTC TAACATCTCA ATTTGATGGA ACTTTGGCTC CCTACTCGGA CTATGCTTAA AY292608 AACATCTCT GCGTGATGGA ACTTTGGCTC CTTACTAGCA CTCTGCTTAA Consensus tgacgct.ta gtagacct.c ccgccccctc .AAcATCTCt gcgTGATGGA ACTTTGGCTC CtTACTaGca CTcTGCTTAA 161 240 NC_004380 TTGCCCAAGT CTTAACGGGA CTATTTCTAG CCATACACTA CACCTCTGAT ATCGCCACAG CTTTCTCCTC AGTAGCACAC AP004414 TTGCCCAAGT CTTAACGGGA CTATTTCTAG CCATACACTA CACCTCTGAT ATCGCCACAG CTTTCTCCTC AGTAGCACAC AY091555 TTGCCCAAAT CTTAACAGGA CTATTTCTAG CCATACACTA CACCTCTGAT ATCGCCACAG CTTTCTCCTC AGTAGCACAC AY091554 TTACCCAAAT CTTAACAGGA CTATTTCTAG CTATACACTA CACCTCTGAT ATCGCCACAG CTTTCTCCTC AGTAGCACAC AY091553 TTGCCCAAAT CTTAACAGGA CTATTTCTAG CTATACACTA CACCTCTGAT ATCGCCACAG CTTTCTCCTC AGTAGCACAC AP004413 TTATCCAAAT CCTCACCGGA CTATTTCTCG CCATACATTA CACCTCTGAC ATTGCTACCG CCTTTTCCTC AGTAGCACAC AY292608 TTGCCCAAGT CTTAACGGGA CTATTTCTAG CCATACACTA CACCTCTGAT ATCGCCACAG CTTTCTCCTC AGTAGCACAC Consensus TTgcCCAAaT CtTaACgGGA CTATTTCTaG CcATACAcTA CACCTCTGAt ATcGCcACaG CtTTcTCCTC AGTAGCACAC 241 320 NC_004380 ATCTGCCGAG ACGTAAACTA CGGATGACTG ATCCGCAACC TTCATGCCAA CGGCGCCTCC TTCTTCTTTA TTTGCATCTA AP004414 ATCTGCCGAG ACGTAAACTA CGGATGACTG ATCCGCAACC TTCATGCCAA CGGCGCCTCC TTCTTCTTTA TTTGCATCTA AY091555 ATCTGTCGAG ACGTAAACTA CGGATGACTA ATCCGCAACC TTCATGCCAA TGGGGCCTCC TTCTTCTTTA TTTGCATCTA AY091554 ATCTGTCGAG ACGTAAACTA CGGATGACTC ATCCGCAACC TTCATGCCAA CGGAGCCTCC TTCTTCTTTA TTTGCATCTA AY091553 ATCTGTCGAG ACGTAAACTA CGGATGACTC ATCCGCAACC TTCATGCCAA CGGAGCCTCC TTCTTCTTTA TTTGCATCTA AP004413 ATCTGCCGAG ATGTCAATTA TGGCTGGCTT ATCCGAAACC TCCATGCAAA CGGAGCCTCC TTTTTCTTTA TTTGCATTTA AY292608 ATCTGCCGAG ACGTAAACTA CGGATGACTG ATCCGCAACC TTCATGCCAA CGGCGCCTCC TTCTTCTTTA TTTGCATCTA Consensus ATCTGcCGAG AcGTaAAcTA cGGaTGaCTg ATCCGcAACC TtCATGCcAA cGGcGCCTCC TTcTTCTTTA TTTGCATcTA 321 400 NC_004380 CATGCACATT GGACGAGGCT TATACTACGG CTCCTACCTC TACAAAGAAA CATGAAACAT CGGAGTGGTC CTTCTCCTCC AP004414 CATGCACATT GGACGAGGCT TATACTACGG CTCCTACCTC TACAAAGAAA CATGAAACAT CGGAGTGGTC CTTCTCCTCC AY091555 TATGCATATT GGACGAGGCT TGTATTACGG CTCTTACCTC TACAAAGAAA CATGAAACGT TGGAGTAGTC CTTCTCCTCC AY091554 CATGCATATC GGACGAGGAT TATATTACGG CTCCTACCTC TACAAAGAAA CATGAAACAT TGGGGTAGTA CTTCTCCTCC AY091553 CATGCATATC GGACGAGGAT TATATTACGG CTCCTACCTC TACAAAGAAA CATGAAACAT TGGGGTAGTA CTTCTCCTCC AP004413 CATGCACATC GGACGCGGCC TTTACTATGG ATCGTACCTC TATAAAGAAA CCTGAAATAT CGGAGTTATC CTTCTACTAC AY292608 CATGCACATT GGGCGAGGCT TATACTACGG CTCCTACCTC TACAAAGAAA CATGAAACAT CGGAGTGGTC CTTCTCCTCC Consensus cATGCAcATt GGaCGaGGct TaTAcTAcGG cTCcTACCTC TAcAAAGAAA CaTGAAAcaT cGGaGTggTc CTTCTcCTcC 401 464 NC_004380 TGGTTATAAT AACAGCATTC GTAGGCTATG TACTACCCTG GGGCCAGATA TCCTTCTGAG GCGC AP004414 TGGTTATAAT AACAGCATTC GTAGGCTATG TACTACCCTG GGGCCAGATA TCCTTCTGAG GCGC AY091555 TAGTTATAAT GACAGCATTC GTAGGCTACG TTCTACCG AY091554 TGGTTATAAT AACAGCATTC GTAGGCTATG TACTACCG AY091553 TGGTTATAAT AACAGCATTC GTAGGCTATG TACTACCG AP004413 TCGTCATAGC CACCGCATTC GTTGGTTATG TCCTACCCTG AGGGCAAATA TCATTCTGAG GCGC AY292608 TGGTTATAAT AACAGCATTT GTAGGGTAT Consensus TgGTtATAat aACaGCATTc GTaGGcTAtg t.ctacc... .......... .......... ....
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890