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Sardinella longiceps – Alignment
1 80 AF472584 ATGGCAAGTT TACGAAAAAC TCACCCACTT CTCAAAATTG CTAACGACGC AGTCGTTGAC CTCCCAGCCC CTTCCAATAT AF472583 ATGGCAAGCC TACGAAAAAC CCACCCGCTC CTAAAAATCG CTAACGACGC AGTAGTCGAT CTCCCAGCTC CCTCCAACAT AF104948 C CATCCAACAT AF104947 C CATCCAACAT AF104945 C CATCCAACAT AF104946 C CATCCAACAT AF104944 C CATCCAACAT Consensus .......... .......... .......... .......... .......... .......... .........C CaTCCAAcAT 81 160 AF472584 TTCAGTATGA TGAAATTTTG GGTCACTTCT AGGACTGTGT TTAGCGACAC AGATCCTAAC AGGTCTATTT TTAGCTATAC AF472583 TTCAGTCTGA TGAAACTTTG GATCGCTGCT AGGACTATGC TTGGCGTCAC AAATTTTGAC CGGGCTATTC CTAGCTATAC AF104948 CTCAGCATGA TGAAATTTCG GATCGCTTCT AGGTCTCTGC TTAGCATCTC AAATCCTGAC AGGACTATTT TTAGCCATAC AF104947 CTCAGCATGA TGAAATTTCG GATCGCTTCT AGGTCTCTGC TTAGCATCTC AAATCCTGAC AGGACTATTT TTAGCCATAC AF104945 CTCAGCATGA TGAAATTTCG GATCGCTTCT AGGTCTCTGC TTAGCATCTC AAATCCTGAC AGGACTATTT TTAGCCATAC AF104946 CTCAGCATGA TGAAATTTCG GATCGCTTCT AGGTCTCTGC TTAGCATCTC AAATCCTGAC AGGACTATTT TTAGCCATAC AF104944 CTCAGCATGA TGAAATTTCG GATCGCTTCT AGGTCTCTGC TTAGCATCTC AAATCCTGAC AGGACTATTT TTAGCCATAC Consensus cTCAGcaTGA TGAAAtTTcG GaTCgCTtCT AGGtCTcTGc TTaGCatCtC AaATccTgAC aGGaCTATTt tTAGCcATAC 161 240 AF472584 ATTATACCTC AGACATTGCC ACCGCCTTCT CCTCCGTTGC CCACATTTGC CGTGACGTCA ACTACGGATG ACTGATTCGA AF472583 ACTACACCTC AGATATTGCG ACCGCCTTCT CCTCCGTTGC CCATATTTGC CGTGACGTCA ACTACGGTTG ACTCATTCGC AF104948 ACTACACCTC GGATATCGCA ACCGCCTTTT CTTCCGTTGC ACACATCTGC CGTGATGTTA ATTACGGCTG ACTGATCCGT AF104947 ACTACACCTC GGATATCGCA ACCGCCTTTT CTTCCGTTGC ACACATCTGC CGTGATGTTA ATTACGGCTG ACTGATCCGT AF104945 ACTACACCTC GGATATCGCA ACCGCCTTTT CTTCCGTTGC ACACATCTGC CGTGATGTTA ATTACGGCTG ACTGATCCGT AF104946 ACTACACCTC GGATATCGCA ACCGCCTTTT CTTCCGTTGC ACACATCTGC CGTGATGTTA ATTACGGCTG ACTGATCCGT AF104944 ACTACACCTC GGATATCGCA ACCGCCTTTT CTTCCGTTGC ACACATCTGC CGTGATGTTA ATTACGGCTG ACTGGTCCGT Consensus AcTAcACCTC gGAtATcGCa ACCGCCTTtT CtTCCGTTGC aCAcATcTGC CGTGAtGTtA AtTACGGcTG ACTgaTcCGt 241 320 AF472584 AGCATGCACG CAAACGGAGC ATCTTTCTTC TTCATTTGCA TTTACGCCCA CATTGGACGA GGGCTCTACT ACGGGTCTTA AF472583 AACATGCACG CAAACGGAGC ATCTTTCTTC TTCATCTGCA TCTACGCCCA CATTGGCCGA GGACTTTACT ACGGCTCATA AF104948 AACATGCATG CAAACGGAGC ATCTTTCTTC TTCATCTGCA TTTACGCCCA CATCGGCCGA GGTCTCTATT ACGGGTCCTA AF104947 AACATGCATG CAAACGGAGC ATCTTTCTTC TTCATCTGCA TTTACGCCCA CATCGGCCGA GGTCTCTATT ACGGGTCCTA AF104945 AACATGCATG CAAACGGAGC ATCTTTCTTC TTCATCTGCA TTTACGCCCA CATCGGCCGA GGTCTCTATT ACGGGTCCTA AF104946 AACATGCATG CAAACGGAGC ATCTTTCTTC TTCATCTGCA TTTACGCCCA CATCGGCCGA GGTCTCTATT ACGGGTCCTA AF104944 AACATGCATG CAAACGGAGC ATCTTTCTTC TTCATCTGCA TTTACGCCCA CATCGGCCGA GGTCTCTATT ACGGGTCCTA Consensus AaCATGCAtG CAAACGGAGC ATCTTTCTTC TTCATcTGCA TtTACGCCCA CATcGGcCGA GGtCTcTAtT ACGGgTCcTA 321 400 AF472584 CCTCTATAAG GAAACCTGAA ATATTGGAGT CGTCCTCCTT CTCCTAGTCA TGATGACCGC CTTCGTAGGC TACGTCCTTC AF472583 TCTCTACAAG GAAACATGAA ATGTAGGGGT AGTTCTTCTT CTCCTAACCA TGATGACGGC CTTTGTAGGC TACGTCCTGC AF104948 CTTGTACAAG GAGACATGAA ATATTGGAGT GATCCTGCTG CTCCTAACTA TGATGACAGC CTTTGTAGGC TACGTCCTGC AF104947 CTTGTACAAG GAGACATGAA ATATTGGAGT GATCCTGCTG CTCCTAACTA TGATGACAGC CTTTGTAGGC TACGTCCTGC AF104945 CTTGTACAAG GAGACATGAA ATATTGGAGT GATCCTGCTG CTCCTAACTA TGATGACAGC CTTTGTAGGC TACGTCCTGC AF104946 CTTGTACAAG GAGACATGAA ATATTGGAGT GATCCTGCTG CTCCTAACTA TGATGACAGC CTTTGTAGGC TACGTCCTGC AF104944 CTTGTACAAG GAGACATGAA ATATTGGAGT GATCCTGCTG CTCCTAACTA TGATGACAGC CTTTGTAGGC TACGTCCTGC Consensus ctTgTAcAAG GAgACaTGAA ATaTtGGaGT gaTcCTgCTg CTCCTAactA TGATGACaGC CTTtGTAGGC TACGTCCTgC 401 428 AF472584 CATGAGGACA AATGTCCTTC TGAGGTGC AF472583 CCTGAGGACA AATGTCTTTC TGAGGTGC AF104948 CTTGAGGACA AATATCATTC TGAGGGG AF104947 CTTGAGGACA AATATCATTC TGAGGGG AF104945 CTTGAGGACA AATATCATTC TGAGGGG AF104946 CTTGAGGACA AATATCATTC TGAGGGG AF104944 CTTGAGGACA AATATCATTC TGAGGGG Consensus CtTGAGGACA AATaTCaTTC TGAGGgG.
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890