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Sarda orientalis – Alignment
1 80 X81562 ATGGCAAGCC TCCGAAAAAC TCACCCACTA TTAAAAATCG CTAACGACGC ACTAGTTGAC CTACCCACCC CTTCCAATAT AB098098 TAAAAATCG CTAACGACGC ACTAGTTGAC CTTCCCACCC CTTCCAATAT AB098097 ACGACGC ACTAGTTGAC CTTCCCACCC CTTCCAATAT L11549 L11548 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 81 160 X81562 CTCTGCATGA TGAAATTTTG GCTCACTACT TGGCCTTTGC CTGATCTCCC AAATCCTTAC AGGACTATTC CTAGCAATAC AB098098 CTCTGCATGA TGAAATTTTG GCTCATTACT AGGCCTTTGC CTTATTTCCC AAATCCTTAC GGGATTATTT CTAGCAATGC AB098097 CTCTGCATGA TGAAATTTTG GCTCATTACT AGGCCTTTGC CTAATTTCCC AAATCCTTAC GGGATTATTT CTAGCAATGC L11549 TCCTCAC AGGACTATTC CTAGCAATAC L11548 TCCTTAC AGGACTATTC CTAGCAATAC Consensus .......... .......... .......... .......... .......... ...TCCTtAC aGGAcTATTc CTAGCAATaC 161 240 X81562 ATTATACCCC TGATGTCGAA TCAGCCTTCG CCTCAGTCGC CCACATTTGC CGGGACGTTA ATTTCGGCTG ACTAATCCGA AB098098 ACTACACCCC TGATGTCGAG TCAGCCTTCG CCTCGGTCGC CCACATCTGC CGAGATGTTA ATTTCGGCTG ACTAATCCGG AB098097 ACTACACCCC TGATGTCGAG TCAGCCTTCG CCTCGGTCGC CCACATCTGC CGAGATGTTA ATTTCGGCTG ACTAATCCGG L11549 ATTATACCCC TGATGTCGAA TCAGCCTTCG CCTCAGTCGC CCACATTTGC CGAGACGTTA ATTTCGGCTG ACTAATCCGA L11548 ATTATACCCC TGATGTCGAA TCAGCCTTCG CCTCAGTCGC CCACATTTGC CGGGACGTTA ATTTCGGCTG ACTAATCCGA Consensus AtTAtACCCC TGATGTCGAa TCAGCCTTCG CCTCaGTCGC CCACATtTGC CGaGAcGTTA ATTTCGGCTG ACTAATCCGa 241 320 X81562 AACCTCCACG CAAACGGGGC CTCCTTCTTC TTCATCTGTA TCTACTTCCA CATTGGCCGA GGCCTTTACT ACGGCTCCTA AB098098 AACCTCCACG CAAACGGCGC CTCCTTTTTC TTCATTTGCA TCTACTTCCA CATTGGTCGA GGCCTTTACT ACGGCTCCTA AB098097 AACCTCCACG CAAACGGCGC CTCCTTTTTC TTCATTTGCA TCTACTTCCA CATTGGTCGA GGCCTTTACT ACGGCTCCTA L11549 AACCTCCACG CAAACGGCGC TTCCTTCTTC TTCATCTGCA TCTACTTCCA TATTGGTCGA GGCCTTTACT ACGGCTCCTA L11548 AACCTCCACG CAAACGGGGC CTCCTTCTTC TTCATCTGTA TCTACTTCCA CATTGGCCGA GGCCTTTACT ACGGCTCCTA Consensus AACCTCCACG CAAACGGcGC cTCCTTcTTC TTCATcTGcA TCTACTTCCA cATTGGtCGA GGCCTTTACT ACGGCTCCTA 321 400 X81562 CCTCTACAAA GAAACATGAA ACATTGGCGT AGTCCTTCTA CTTTTAGTAA TGATGACCGC TTTCGTCGGT TACGTTCTTC AB098098 CCTCTACAAA GAAACATGAA ACATCGGCGT TGTACTTCTA CTTTTAGTAA TAATAACTGC CTTCGTCGGT TACGTCCTCC AB098097 CCTCTACAAA GAAACATGAA ACATCGGCGT TGTACTTCTA CTTTTAGTAA TAATAACTGC CTTCGTCGGT TACGTCCTCC L11549 CCTCTACAAA GAAACATGAA ACATTGGAGT AGTCCTCCTA CTTTTAGTAA TGATGACCGC TTTCGTCGGC TACGTYCTTC L11548 CCTCTACAAA GAAACATGAA ACATTGGAGT AGTCCTTCTA CTTTTAGTAA TGATGACCGC TTTCGTCGGG TACGTTCTTC Consensus CCTCTACAAA GAAACATGAA ACATtGGaGT aGTcCTtCTA CTTTTAGTAA TgATgACcGC tTTCGTCGG. TACGT.CTtC 401 428 X81562 CCTGAGGACA GATGTCCTTC TGAGGAGC AB098098 CCTGAGGACA AATGTCCTTC TGAGGTGC AB098097 CCTGAGGACA AATGTCCTTC TGAGGTGC L11549 CCTGAGGACA GATGTCCTTC TGAGGGGC L11548 CCTGAGGACA GATGTCCTTC TGAGGGGC Consensus CCTGAGGACA gATGTCCTTC TGAGGgGC
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890