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- State: published
Sardinops sagax – Alignment
1 80 NC_002616 AAAAGCCACC GTTGTTATTC AACTATAGAA ACCCTAATGG CAAGCCTACG GAAAACCCAC CCACTTATAA AAATTGCTAA AB032554 AAAAGCCACC GTTGTTATTC AACTATAGAA ACCCTAATGG CAAGCCTACG GAAAACCCAC CCACTTATAA AAATTGCTAA AF472586 ATGG CAAGCCTACG GAAAACCCAC CCACTTATAA AAATTGCTAA AF472585 ATGG CAAGCCTACG GAAAACCCAC CCACTTATAA AAATTGCTAA AF107341 Consensus .......... .......... .......... ......atgg caagcctacg gaaaacccac ccacttataa aaattgctaa 81 160 NC_002616 CGACGCATTA GTCGACCTAC CAGCCCCCTC TAACATTTCA GTCTGATGAA ACTTTGGCTC ACTCCTGGGC CTATGTTTAG AB032554 CGACGCATTA GTCGACCTAC CAGCCCCCTC TAACATTTCA GTCTGATGAA ACTTTGGCTC ACTCCTGGGC CTATGTTTAG AF472586 CGACGCATTA GTCGACCTAC CAGCTCCCTC TAACATTTCA GTCTGATGAA ACTTTGGCTC ACTCCTGGGC CTATGTTTAG AF472585 CGACGCATTA GTCGACCTAC CAGCTCCCTC TAACATTTCA GTCTGATGAA ACTTTGGCTC ACTCCTGGGC CTATGTTTAG AF107341 CTTTGGCTC ACTCCTGGGC CTATGTTTAG Consensus cgacgcatta gtcgacctac cagc.ccctc taacatttca gtctgatgaa aCTTTGGCTC ACTCCTGGGC CTATGTTTAG 161 240 NC_002616 CAGCACAGAT TTTGACAGGA CTATTCCTGG CCATACATTA CACCTCTGAT ATCGCAACTG CGTTCTCTTC GGTCGCCCAT AB032554 CAGCACAGAT TTTGACAGGA CTATTCCTGG CCATACATTA CACCTCTGAT ATCGCAACTG CGTTCTCTTC GGTCGCCCAT AF472586 CAGCACAGAT TTTGACAGGA TTGTTCCTGG CTATACATTA CACCTCTGAT ATCGCAACTG CGTTCTCTTC GGTCGCCCAT AF472585 CAGCACAGAT TTTGACAGGA TTATTCCTGG CTATACATTA CACCTCTGAT ATCGCAACTG CGTTCTCTTC GGTCGCCCAT AF107341 CAGCGCAGAT TTTGACAGGA TTATTCCTGG CCATGCATTA CACCTCTGAT ATCGCAACTG CGTTCTCTTC GGTCGCCCAT Consensus CAGCaCAGAT TTTGACAGGA tTaTTCCTGG CcATaCATTA CACCTCTGAT ATCGCAACTG CGTTCTCTTC GGTCGCCCAT 241 320 NC_002616 ATTTGCCGTG ATGTTAATTA TGGCTGACTA ATCCGGAGCA TGCACGCGAA CGGAGCATCA TTCTTCTTTA TCTGCATTTA AB032554 ATTTGCCGTG ATGTTAATTA TGGCTGACTA ATCCGGAGCA TGCACGCGAA CGGAGCATCA TTCTTCTTTA TCTGCATTTA AF472586 ATTTGCCGTG ATGTTAATTA TGGCTGACTA ATCCGGAGCA TGCACGCGAA CGGAGCATCA TTCTTCTTTA TCTGCATTTA AF472585 ATTTGCCGTG ATGTTAATTA TGGCTGACTA ATCCGGAGCA TGCACGCGAA CGGAGCATCA TTCTTCTTTA TCTGCATTTA AF107341 ATTTGCCGTG ACGTTAATTA TGGCTGACTA ATCCGGAGCA TGCACGCGAA CGGAGCATCA TTCTTCTTTA TCTGCATTTA Consensus ATTTGCCGTG AtGTTAATTA TGGCTGACTA ATCCGGAGCA TGCACGCGAA CGGAGCATCA TTCTTCTTTA TCTGCATTTA 321 400 NC_002616 TGCTCACATT GGTCGGGGAC TCTACTATGG TTCATATCTC TACAAGGAGA CCTGAAACAT CGGGGTAGTC CTCCTGCTTC AB032554 TGCTCACATT GGTCGGGGAC TCTACTATGG TTCATATCTC TACAAGGAGA CCTGAAACAT CGGGGTAGTC CTCCTGCTTC AF472586 TGCTCACATT GGTCGGGGAC TCTACTATGG TTCATACCTC TACAAAGAGA CCTGAAACAT CGGGGTAGTC CTCCTGCTTC AF472585 TGCTCACATT GGTCGGGGAC TCTACTATGG TTCATACCTC TACAAGGAGA CCTGAAACAT CGGGGTAGTC CTCCTGCTTC AF107341 TGCCCACATC GGTCGGGGAC TCTACTATGG TTCATATCTC TACAAGGAGA CCTGAAACAT CGGGGTAGT Consensus TGCtCACATt GGTCGGGGAC TCTACTATGG TTCATAtCTC TACAAgGAGA CCTGAAACAT CGGGGTAGTc ctcctgcttc 401 464 NC_002616 TCGTTATGAT GACTGCCTTC GTGGGCTATG TTCTGCCTTG AGGCCAAATG TCTTTCTGAG GGGC AB032554 TCGTTATGAT GACTGCCTTC GTGGGCTATG TTCTGCCTTG AGGCCAAATG TCTTTCTGAG GGGC AF472586 TCGTTATGAT GACTGCCTTC GTGGGCTATG TTCTGCCTTG AGGCCAAATG TCCTTCTGAG GGGC AF472585 TCGTTATGAT GACTGCCTTC GTGGGCTATG TTCTGCCTTG AGGCCAAATG TCCTTCTGAG GGGC AF107341 Consensus tcgttatgat gactgccttc gtgggctatg ttctgccttg aggccaaatg tc.ttctgag gggc
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890