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Scomberomorus maculata – Alignment
1 80 AF231666 ATGACMAACC TACGAAAAAC CCATCCACTA CTAAAAATTG CTAATGACGC TCTAGTTGAC CTTCCAACCC CCTCCAGCAT L11545 L11543 AY390592 AY390590 AY390589 AY390591 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 81 160 AF231666 CACTGCAATA TGAAACTTTG GATCACTACT TGGCCTCTGC TTGATCTCCC AAATCCTTAC AGGCCTATTT CTTGCAATAC L11545 TCCTCAC AGGCCTCTTC CTCGCGATAC L11543 TCCTTAC AGGACTCTTC CTTGCAATAC AY390592 TCG GCTCACTACT TGGTCTTTGC CTAATCTCCC AAATCCTCAC AGGACTATTC CTTGCAATAC AY390590 TCG GCTCACTACT CGGCCTTTGC CTAATTTCCC AGATCCTCAC AGGACTGTTC CTTGCAATAC AY390589 TCG GCTCACTACT TGGCCTTTGC CTAATCTCCC AAATCCTCAC AGGACTGTTC CTTGCAATAC AY390591 TCG GGTCACTACT CGGCCTTTGC CTCATCTCCC AAATCCTCAC AGGATTATTC CTTGCAATAC Consensus .......... .......tcg g.tcactact .ggcctttgc ct.atctccc aaaTCCTcAC AGGacTaTTc CTtGCaATAC 161 240 AF231666 ACTACACCCC CGACATCGAA TCCGCCTTTA ATTCAGTTGC CCACATCTGC CGAGACGTCA ACTTCGGCTG ACTAATCCGA L11545 ACTACACCCC AGACGTCGAA TCGGCCTTTG CCTCAGTCGC CCATATTTGC CGAGACGTCA ACTTCGGCTG ACTCATCCGA L11543 ACTACACACC AGACGTCGAA TCGGCCTTCG CCTCAGTAGC TCATATTTGC CGAGACGTCA ACTTCGGCTG ACTCATTCGA AY390592 ACTACACCCC AGATATCGAA TCCGCCTTCA ACTCAGTCGC CCATATTTGC CGAGATGTTA ACTTTGGCTG ACTTATCCGT AY390590 ACTACACCCC TGACATCGAA TCGGCCTTCT CCTCGGTCGC CCATATTTGC CGGGACGTCA ACTTCGGCTG ACTTATCCGC AY390589 ATTATACCCC AGACATCGAA TCTGCCTTCT CCTCAGTCGC CCACATTTGC CGGGACGTTA ACTTCGGCTG ACTAATCCGC AY390591 ACTACACCCC TGATATCGAA TCAGCCTTCA ACTCAGTTGC CCACATCTGC CGAGACGTTA ATTTCGGCTG ACTCATCCGA Consensus ACTACACcCC aGAcaTCGAA TC.GCCTTca acTCAGT.GC cCAtATtTGC CGaGAcGTcA AcTTcGGCTG ACT.ATcCGa 241 320 AF231666 AACCTCCATG CAAATGGCGC ATCCTTCTTC TTCATCTGCC TCTATTTACA CATCGGCCGA GGTCTCTATT ACGGCTCCYA L11545 AACCTTCATG CAAACGGTGC ATCCTTCTTC TTCATCTGTA TCTATTTCCA CATCGGCCGA GGCCTCTACT ACGGCTCTTA L11543 AATCTTCATG CAAATGGAGC ATCCTTCTTC TTCATCTGTA TCTACTTCCA CATTGGCCGA GGTCTCTACT ACGGCTCCTA AY390592 AACCTCCATG CTAACGGAGC ATCCTTCTTT TTCATCTGTA TCTATTTCCA CATTGGACGA GGCCTTTACT ATGGTTCATA AY390590 AACCTCCACG CAAACGGCGC ATCCTTCTTT TTCATCTGTA TCTATTTCCA CATTGGACGA GGCCTTTACT ACGGCTCCTA AY390589 AATCTCCACG CAAACGGCGC ATCCTTCTTT TTCATCTGCA TCTACTTCCA CATTGGACGA GGCCTTTACT ACGGCTCCTA AY390591 AACCTCCATG CAAATGGTGC ATCCTTCTTC TTCATCTGCA TTTACTTCCA CATCGGACGA GGCCTCTACT ACGGCTCATA Consensus AAcCTcCAtG CaAAtGG.GC ATCCTTCTTc TTCATCTGta TcTAtTTcCA CATcGGaCGA GGcCTcTAcT AcGGcTCctA 321 400 AF231666 CCTCTACAAA GAAACCTGAA ACATTGGCGT TATTCTTTTA CTCCTAGTTA TAATGACAGC TTTCGTTGGC TACGTCCTTC L11545 CCTCTACAAA GAAACCTGAA ACATCGGCGT AGTCCTTCTA CTCCTAGTTA TAATAACAGC CTTCGTAGGC TACGTCCTTC L11543 CCTCTACAAA GAAACCTGAA ACATTGGAGT TGTTCTTCTA CTCCTGGTAA TAATGACAGC CTTCGTAGGC TACGTTCTCC AY390592 CCTTTACAAA GAAACCTGAA ATATTGGAGT AGTTCTTCTT CTATTAGTAA TAATAACAGC CTTTGTTGGC TACGTAC AY390590 TCTCTACAAA GAAACTTGAA ATATTGGAGT AGTCCTGCTC CTCCTAGTTA TGATAACAGC CTTCGTCGGG TACGTAC AY390589 TCTCTATAAA GAGACCTGAA ACATCGGCGT TGTTCTTCTC CTCCTAGTAA TGATAACAGC CTTCGTCGGC TACGTCC AY390591 CCTCTATAAA GAAACTTGAA ACATCGGTGT AATCCTCCTA CTCCTAGTAA TGATGACAGC CTTCGTTGGC TATGTTC Consensus cCTcTAcAAA GAAACcTGAA AcATtGG.GT agTtCTtcTa CTccTaGTaA TaATgACAGC cTTcGTtGGC TAcGT.C... 401 428 AF231666 CCTGAGGACA AATGTCATTC TGAGGAGC L11545 CCTGAGGACA GATATCATTT TGAGGGGC L11543 CCTGAGGACA AATGTCATTT TGAGGTGC AY390592 AY390590 AY390589 AY390591 Consensus .......... .......... ........
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890