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  • State: published

Scomberomorus maculata – Alignment

 


            1                                                                                    80
  AF231666  ATGACMAACC TACGAAAAAC CCATCCACTA CTAAAAATTG CTAATGACGC TCTAGTTGAC CTTCCAACCC CCTCCAGCAT
    L11545                                                                                         
    L11543                                                                                         
  AY390592                                                                                         
  AY390590                                                                                         
  AY390589                                                                                         
  AY390591                                                                                         
 Consensus  .......... .......... .......... .......... .......... .......... .......... ..........

            81                                                                                  160
  AF231666  CACTGCAATA TGAAACTTTG GATCACTACT TGGCCTCTGC TTGATCTCCC AAATCCTTAC AGGCCTATTT CTTGCAATAC
    L11545                                                            TCCTCAC AGGCCTCTTC CTCGCGATAC
    L11543                                                            TCCTTAC AGGACTCTTC CTTGCAATAC
  AY390592                    TCG GCTCACTACT TGGTCTTTGC CTAATCTCCC AAATCCTCAC AGGACTATTC CTTGCAATAC
  AY390590                    TCG GCTCACTACT CGGCCTTTGC CTAATTTCCC AGATCCTCAC AGGACTGTTC CTTGCAATAC
  AY390589                    TCG GCTCACTACT TGGCCTTTGC CTAATCTCCC AAATCCTCAC AGGACTGTTC CTTGCAATAC
  AY390591                    TCG GGTCACTACT CGGCCTTTGC CTCATCTCCC AAATCCTCAC AGGATTATTC CTTGCAATAC
 Consensus  .......... .......tcg g.tcactact .ggcctttgc ct.atctccc aaaTCCTcAC AGGacTaTTc CTtGCaATAC

            161                                                                                 240
  AF231666  ACTACACCCC CGACATCGAA TCCGCCTTTA ATTCAGTTGC CCACATCTGC CGAGACGTCA ACTTCGGCTG ACTAATCCGA
    L11545  ACTACACCCC AGACGTCGAA TCGGCCTTTG CCTCAGTCGC CCATATTTGC CGAGACGTCA ACTTCGGCTG ACTCATCCGA
    L11543  ACTACACACC AGACGTCGAA TCGGCCTTCG CCTCAGTAGC TCATATTTGC CGAGACGTCA ACTTCGGCTG ACTCATTCGA
  AY390592  ACTACACCCC AGATATCGAA TCCGCCTTCA ACTCAGTCGC CCATATTTGC CGAGATGTTA ACTTTGGCTG ACTTATCCGT
  AY390590  ACTACACCCC TGACATCGAA TCGGCCTTCT CCTCGGTCGC CCATATTTGC CGGGACGTCA ACTTCGGCTG ACTTATCCGC
  AY390589  ATTATACCCC AGACATCGAA TCTGCCTTCT CCTCAGTCGC CCACATTTGC CGGGACGTTA ACTTCGGCTG ACTAATCCGC
  AY390591  ACTACACCCC TGATATCGAA TCAGCCTTCA ACTCAGTTGC CCACATCTGC CGAGACGTTA ATTTCGGCTG ACTCATCCGA
 Consensus  ACTACACcCC aGAcaTCGAA TC.GCCTTca acTCAGT.GC cCAtATtTGC CGaGAcGTcA AcTTcGGCTG ACT.ATcCGa

            241                                                                                 320
  AF231666  AACCTCCATG CAAATGGCGC ATCCTTCTTC TTCATCTGCC TCTATTTACA CATCGGCCGA GGTCTCTATT ACGGCTCCYA
    L11545  AACCTTCATG CAAACGGTGC ATCCTTCTTC TTCATCTGTA TCTATTTCCA CATCGGCCGA GGCCTCTACT ACGGCTCTTA
    L11543  AATCTTCATG CAAATGGAGC ATCCTTCTTC TTCATCTGTA TCTACTTCCA CATTGGCCGA GGTCTCTACT ACGGCTCCTA
  AY390592  AACCTCCATG CTAACGGAGC ATCCTTCTTT TTCATCTGTA TCTATTTCCA CATTGGACGA GGCCTTTACT ATGGTTCATA
  AY390590  AACCTCCACG CAAACGGCGC ATCCTTCTTT TTCATCTGTA TCTATTTCCA CATTGGACGA GGCCTTTACT ACGGCTCCTA
  AY390589  AATCTCCACG CAAACGGCGC ATCCTTCTTT TTCATCTGCA TCTACTTCCA CATTGGACGA GGCCTTTACT ACGGCTCCTA
  AY390591  AACCTCCATG CAAATGGTGC ATCCTTCTTC TTCATCTGCA TTTACTTCCA CATCGGACGA GGCCTCTACT ACGGCTCATA
 Consensus  AAcCTcCAtG CaAAtGG.GC ATCCTTCTTc TTCATCTGta TcTAtTTcCA CATcGGaCGA GGcCTcTAcT AcGGcTCctA

            321                                                                                 400
  AF231666  CCTCTACAAA GAAACCTGAA ACATTGGCGT TATTCTTTTA CTCCTAGTTA TAATGACAGC TTTCGTTGGC TACGTCCTTC
    L11545  CCTCTACAAA GAAACCTGAA ACATCGGCGT AGTCCTTCTA CTCCTAGTTA TAATAACAGC CTTCGTAGGC TACGTCCTTC
    L11543  CCTCTACAAA GAAACCTGAA ACATTGGAGT TGTTCTTCTA CTCCTGGTAA TAATGACAGC CTTCGTAGGC TACGTTCTCC
  AY390592  CCTTTACAAA GAAACCTGAA ATATTGGAGT AGTTCTTCTT CTATTAGTAA TAATAACAGC CTTTGTTGGC TACGTAC   
  AY390590  TCTCTACAAA GAAACTTGAA ATATTGGAGT AGTCCTGCTC CTCCTAGTTA TGATAACAGC CTTCGTCGGG TACGTAC   
  AY390589  TCTCTATAAA GAGACCTGAA ACATCGGCGT TGTTCTTCTC CTCCTAGTAA TGATAACAGC CTTCGTCGGC TACGTCC   
  AY390591  CCTCTATAAA GAAACTTGAA ACATCGGTGT AATCCTCCTA CTCCTAGTAA TGATGACAGC CTTCGTTGGC TATGTTC   
 Consensus  cCTcTAcAAA GAAACcTGAA AcATtGG.GT agTtCTtcTa CTccTaGTaA TaATgACAGC cTTcGTtGGC TAcGT.C...

            401                        428
  AF231666  CCTGAGGACA AATGTCATTC TGAGGAGC
    L11545  CCTGAGGACA GATATCATTT TGAGGGGC
    L11543  CCTGAGGACA AATGTCATTT TGAGGTGC
  AY390592                                
  AY390590                                
  AY390589                                
  AY390591                                
 Consensus  .......... .......... ........

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890