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Trachurus murphyi – Alignment
1 80 AF489408 AF489407 AF489405 AF489406 AF489404 AF489403 X81568 ATGG CAAATCTCCG TAAGACCCAC CCCATCCTAA AAATTGTAAA AY526534 ATGG CAAATCTCCG TAAAACCCAC CCCATCCTAA AAATTGTAAA NC_006818 AAAAACCACC GTTGTTATTC AACTACAAGA ACTCTAATGG CAAATCTCCG TAAAACCCAC CCCATCCTAA AAATTGTAAA AB108498 AAAAACCACC GTTGTTATTC AACTACAAGA ACTCTAATGG CAAATCTCCG TAAAACCCAC CCCATCCTAA AAATTGTAAA AY526533 AF271655 AF271654 Consensus .... .......... .......... .......... .......... 81 160 AF489408 AF489407 AF489405 AF489406 AF489404 AF489403 X81568 CGATTCAATA ATCGACCTCC CTGCTCCCTC GAACATTTCA GCATGATGAA ACTTTGGCTC CCTCCTTGCA CTCTGCCTTA AY526534 CGATTCACTA ATTGACCTCC CTGCTCCCTC GAACATCTCA GCATGATGAA ACTTTGGCTC CCTCCTTGCA CTCTGCCTTA NC_006818 CGATTCACTA ATTGACCTCC CTGCTCCCTC GAACATCTCA GCATGATGAA ACTTTGGCTC CCTCCTTGCA CTCTGCCTTA AB108498 CGATTCACTA ATTGACCTCC CTGCTCCCTC GAACATCTCA GCATGATGAA ACTTTGGCTC CCTCCTTGCA CTCTGCCTTA AY526533 CTCC CTGCTCCCTC GAACATCTCA GCATGATGAA ACTTTGGCTC CCTCCTTGCA CTCTGCCTTA AF271655 AF271654 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 161 240 AF489408 GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC AF489407 GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC AF489405 GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC AF489406 GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC AF489404 GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC AF489403 GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC X81568 TCACCCAAAT CCTCACAGGT CTTTTCCTAG CTATACACTA CACCTCGGAC ATCGCGACCG CCTTTACATC CGTAGCACAC AY526534 TTACCCAAAT CCTCACAGGT CTTTTCCTAG CTATACACTA CACCTCGGAT ATCGCAACCG CCTTTACATC CGTAGCACAC NC_006818 TTACCCAAAT CCTCACAGGT CTTTTCCTAG CTATACACTA CACCTCGGAC ATCGCAACCG CCTTTACATC CGTAGCACAC AB108498 TTACCCAAAT CCTCACAGGT CTTTTCCTAG CTATACACTA CACCTCGGAC ATCGCAACCG CCTTTACATC CGTAGCACAC AY526533 TTACCCAAAT CCTCACAGGT CTTTTCCTAG CTATACACTA CACCTCGGAC ATCGCAACCG CCTTTACATC CGTAGCACAC AF271655 ACAGGT CTTTTCCTAG CTATACACTA CACCTGGGAC ATCGCAACCG CCTTTACATC CGTAGCACAC AF271654 ACAGGT CTTTTCCTAG CTATACACTA CACCTCGGAC ATCGCAACCG CCTTTACATC CGTAGCACAC Consensus .......... .......... .......... .......... ......GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC 241 320 AF489408 ATTTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA AF489407 ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA AF489405 ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA AF489406 ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA AF489404 ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA AF489403 ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA X81568 ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGCAATA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA AY526534 ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA NC_006818 ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA AB108498 ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA AY526533 ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA AF271655 ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA AF271654 ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA Consensus ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA 321 400 AF489408 CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT AF489407 CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGAC CTTCTCCTAT AF489405 CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT AF489406 CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT AF489404 CCTTCACATC GGCCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT AF489403 TCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT X81568 CCTTCACATC GGCCGAGGCC TTTACTACGG GTCATACCTC TACAAAGAGA CCTGAAACAC CGGAGTTGTC CTGCTCCTAT AY526534 CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT NC_006818 CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT AB108498 CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT AY526533 CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT AF271655 CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGG AF271654 CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGG Consensus CCTTCACATC GGtCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGttgtc cttctcctat 401 464 AF489408 TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGAC AF489407 TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGAC AF489405 TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGAC AF489406 TACTTATAGG AACTGCCTTC GTAGGCTACG TCCTTCCTTG AGGAC AF489404 TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGAC AF489403 TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGAC X81568 TACTTATGGG AACTGCCTTC GTAGGATACG TCCTTCCTTG AGGACAGATG TCATTTTGAG GTGC AY526534 TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGACAGATG TCATTTTGAG GTGC NC_006818 TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGACAGATG TCATTTTGAG GTGC AB108498 TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGACAGATG TCATTTTGAG GTGC AY526533 TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGACAGATG TCATTTTGAG GTGC AF271655 AF271654 Consensus tacttatagg aactgccttc gtaggttacg tccttccttg aggac..... .......... ....
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890