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  • State: published

Trachurus lathami – Alignment

 


            1                                                                                    80
  AF489408                                                                                         
  AF489407                                                                                         
  AF489405                                                                                         
  AF489406                                                                                         
  AF489404                                                                                         
  AF489403                                                                                         
    X81568                                         ATGG CAAATCTCCG TAAGACCCAC CCCATCCTAA AAATTGTAAA
  AY526534                                         ATGG CAAATCTCCG TAAAACCCAC CCCATCCTAA AAATTGTAAA
 NC_006818  AAAAACCACC GTTGTTATTC AACTACAAGA ACTCTAATGG CAAATCTCCG TAAAACCCAC CCCATCCTAA AAATTGTAAA
  AB108498  AAAAACCACC GTTGTTATTC AACTACAAGA ACTCTAATGG CAAATCTCCG TAAAACCCAC CCCATCCTAA AAATTGTAAA
  AY526533                                                                                         
  AF271655                                                                                         
  AF271654                                                                                         
 Consensus                                         .... .......... .......... .......... ..........

            81                                                                                  160
  AF489408                                                                                         
  AF489407                                                                                         
  AF489405                                                                                         
  AF489406                                                                                         
  AF489404                                                                                         
  AF489403                                                                                         
    X81568  CGATTCAATA ATCGACCTCC CTGCTCCCTC GAACATTTCA GCATGATGAA ACTTTGGCTC CCTCCTTGCA CTCTGCCTTA
  AY526534  CGATTCACTA ATTGACCTCC CTGCTCCCTC GAACATCTCA GCATGATGAA ACTTTGGCTC CCTCCTTGCA CTCTGCCTTA
 NC_006818  CGATTCACTA ATTGACCTCC CTGCTCCCTC GAACATCTCA GCATGATGAA ACTTTGGCTC CCTCCTTGCA CTCTGCCTTA
  AB108498  CGATTCACTA ATTGACCTCC CTGCTCCCTC GAACATCTCA GCATGATGAA ACTTTGGCTC CCTCCTTGCA CTCTGCCTTA
  AY526533                   CTCC CTGCTCCCTC GAACATCTCA GCATGATGAA ACTTTGGCTC CCTCCTTGCA CTCTGCCTTA
  AF271655                                                                                         
  AF271654                                                                                         
 Consensus  .......... .......... .......... .......... .......... .......... .......... ..........

            161                                                                                 240
  AF489408                                                    GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC
  AF489407                                                    GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC
  AF489405                                                    GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC
  AF489406                                                    GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC
  AF489404                                                    GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC
  AF489403                                                    GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC
    X81568  TCACCCAAAT CCTCACAGGT CTTTTCCTAG CTATACACTA CACCTCGGAC ATCGCGACCG CCTTTACATC CGTAGCACAC
  AY526534  TTACCCAAAT CCTCACAGGT CTTTTCCTAG CTATACACTA CACCTCGGAT ATCGCAACCG CCTTTACATC CGTAGCACAC
 NC_006818  TTACCCAAAT CCTCACAGGT CTTTTCCTAG CTATACACTA CACCTCGGAC ATCGCAACCG CCTTTACATC CGTAGCACAC
  AB108498  TTACCCAAAT CCTCACAGGT CTTTTCCTAG CTATACACTA CACCTCGGAC ATCGCAACCG CCTTTACATC CGTAGCACAC
  AY526533  TTACCCAAAT CCTCACAGGT CTTTTCCTAG CTATACACTA CACCTCGGAC ATCGCAACCG CCTTTACATC CGTAGCACAC
  AF271655                 ACAGGT CTTTTCCTAG CTATACACTA CACCTGGGAC ATCGCAACCG CCTTTACATC CGTAGCACAC
  AF271654                 ACAGGT CTTTTCCTAG CTATACACTA CACCTCGGAC ATCGCAACCG CCTTTACATC CGTAGCACAC
 Consensus  .......... .......... .......... .......... ......GGAC ATCGCAACCG CCTTTACATC CGTAGCACAC

            241                                                                                 320
  AF489408  ATTTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA
  AF489407  ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA
  AF489405  ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA
  AF489406  ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA
  AF489404  ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA
  AF489403  ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA
    X81568  ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGCAATA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA
  AY526534  ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA
 NC_006818  ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA
  AB108498  ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA
  AY526533  ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA
  AF271655  ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA
  AF271654  ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA
 Consensus  ATCTGCCGGG ACGTAAACTA CGGCTGACTT ATCCGTAACA TGCACGCCAA CGGCGCCTCC TTCTTTTTCA TTTGCATTTA

            321                                                                                 400
  AF489408  CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT
  AF489407  CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGAC CTTCTCCTAT
  AF489405  CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT
  AF489406  CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT
  AF489404  CCTTCACATC GGCCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT
  AF489403  TCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT
    X81568  CCTTCACATC GGCCGAGGCC TTTACTACGG GTCATACCTC TACAAAGAGA CCTGAAACAC CGGAGTTGTC CTGCTCCTAT
  AY526534  CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT
 NC_006818  CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT
  AB108498  CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT
  AY526533  CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGTTGTC CTTCTCCTAT
  AF271655  CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGG                
  AF271654  CCTTCACATC GGTCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGG                
 Consensus  CCTTCACATC GGtCGAGGCC TTTACTACGG CTCATACCTC TACAAAGAAA CCTGAAACAC CGGGGttgtc cttctcctat

            401                                                                464
  AF489408  TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGAC                     
  AF489407  TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGAC                     
  AF489405  TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGAC                     
  AF489406  TACTTATAGG AACTGCCTTC GTAGGCTACG TCCTTCCTTG AGGAC                     
  AF489404  TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGAC                     
  AF489403  TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGAC                     
    X81568  TACTTATGGG AACTGCCTTC GTAGGATACG TCCTTCCTTG AGGACAGATG TCATTTTGAG GTGC
  AY526534  TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGACAGATG TCATTTTGAG GTGC
 NC_006818  TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGACAGATG TCATTTTGAG GTGC
  AB108498  TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGACAGATG TCATTTTGAG GTGC
  AY526533  TACTTATAGG AACTGCCTTC GTAGGTTACG TCCTTCCTTG AGGACAGATG TCATTTTGAG GTGC
  AF271655                                                                        
  AF271654                                                                        
 Consensus  tacttatagg aactgccttc gtaggttacg tccttccttg aggac..... .......... ....

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890