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  • State: published

Lutjanus fulvus – Alignment

 


            1                                                                                    80
  AY651959  ATTGCTAACG ACGCTCTAGT TGACCTTCCC GCACCCTCCA ATATTTCAGC ATGATGAAAC TTTGGCTCCC TACTTGGCCT
  AY651958  ATTGCTAACG ACGCTCTAGT TGACCTYCCC GCACCCTCCA ATATTTCAGC ATGATGAAAC TTTGGCTCCC TACTTGGCCT
  AY651957  ATTGCTAACG ACGCTCTAGT TGACCTTCCC GCACCCTCCA ATATTTCAGT ATGATGAAAC TTTGGCTCCC TACTTGGCCT
  AY294197  ATTGCTAACG ACGCTCTAGT TGACCTTCCC GCACCCTCCA ATATTTCAGT ATGATGAAAC TTTGGCTCCC TACTTGGCCT
  AY294194  ATTGCTAACG ACGCTCTAGT TGACCTTCCC GCACCCTCCA ATATTTCAGT ATGATGAAAC TTTGGCTCCC TACTTGGCCT
  AY294196  ATTGCTAACG ACGCACTAGT AGACCTCCCA GCGCCCTCTA ATATTTCAGT ATGATGAAAC TTTGGCTCTC TACTTGGCCT
  AY294195  ATTGCTAACG ACGCACTAGT AGACCTCCCA GCGCCCTCTA ATATTTCAGT ATGATGAAAC TTTGGCTCTC TACTTGGCCT
  AY294189  ATTGCTAACG ACGCACTAGT AGACCTCCCA GCGCCCTCTA ATATTTCAGT ATGATGAAAC TTTGGCTCTC TACTTGGCCT
  AY294191  ATTGCTAACG ACGCACTAGT AGACCTCCCA GCGCCCTCTA ATATTTCAGT ATGATGAAAC TTTGGCTCTC TACTTGGCCT
  AY294192  ATTGCTAACG ACGCACTAGT AGACCTCCCA GCGCCCTCTA ATATTTCAGT ATGATGAAAC TTTGGCTCTC TACTTGGCCT
  AY294193  ATTGCTAACG ACGCACTAGT AGACCTCCCA GCGCCCTCTA ATATTTCAGT ATGATGAAAC TTTGGCTCTC TACTTGGCCT
 Consensus  ATTGCTAACG ACGCtCTAGT tGACCT.CCc GCaCCCTCcA ATATTTCAGt ATGATGAAAC TTTGGCTCcC TACTTGGCCT

            81                                                                                  160
  AY651959  TTGCTTAATC GCCCAAATTT TAACAGGACT TTTCCTCGCC ATACACTACA CCTCGGACAT CACAATGGCC TTCTCACTCG
  AY651958  TTGCTTAATT GCCCAGATTT TAACAGGACT TTTCCTCGCC ATACACTACA CCTCGGACAT CACAATGGCC TTCTCACTCG
  AY651957  TTGCTTAATT GCCCAAATTT TAACAGGACT TTTCCTCGCT ATACATTACA CCTCCGACAT CACAATAGCC TTCTCATCCG
  AY294197  TTGCTTAATT GCCCAAATTT TAACAGGACT TTTCCTCGCT ATACACTACA CCTCCGACAT CACAATGGCC TTCTCATCCG
  AY294194  TTGCTTAATT GCCCAAATTT TAACAGGACT TTTCCTCGCT ATACACTACA CCTCCGACAT CACAATGGCC TTCTCATCCG
  AY294196  TTGCTTAATC GCCCAAATTC TAACAGGACT CTTCCTCGCA ATACATTATA CCTCAGATAT TACCATGGCC TTTTCATCCG
  AY294195  TTGCTTAATC GCCCAAATTC TAACAGGACT CTTCCTCGCA ATACATTATA CCTCAGATAT TACCATGGCC TTTTCATCCG
  AY294189  TTGCTTAATC GCCCAAATTC TAACAGGACT CTTCCTCGCA ATACATTATA CCTCAGATAT TACCATGGCC TTTTCATCCG
  AY294191  TTGCTTAATC GCCCAAATTC TAACAGGACT CTTCCTCGCA ATACATTATA CCTCAGATAT TACCATGGCC TTTTCATCCG
  AY294192  TTGCTTAATC GCCCAAATTC TAACAGGACT CTTCCTCGCA ATACATTATA CCTCAGATAT TACCATGGCC TTTTCATCCG
  AY294193  TTGCTTAATC GCCCAAATTC TAACAGGACT CTTCCTCGCA ATACATTATA CCTCAGATAT TACCATGGCC TTTTCATCCG
 Consensus  TTGCTTAATc GCCCAaATTt TAACAGGACT tTTCCTCGC. ATACAtTAcA CCTC.GAcAT cACaATgGCC TTcTCAtcCG

            161                                                                                 240
  AY651959  TTGCCCACAT CTGCCGCGAC GTAAACTACG GATGACTAAT CCGCAAACTA CACGCCAACG GCGCCTCTTT CTTCTTCATT
  AY651958  TTGCCCACAT CTGCCGCGAC GTAAACTACG GATGACTAAT CCGCAAACTA CACGCCAACG GCGCCTCTTT CTTCTTCATT
  AY651957  TTGCCCACAT CTGCCGAGAC GTAAATTACG GATGACTAAT CCGCAAGCTA CACGCCAACG GTGCCTCCTT CTTCTTCATC
  AY294197  TTGCCCACAT CTGCCGAGAC GTAAATTACG GATGACTAAT CCGCAACCTA CACGCCAACG GTGCCTCCTT CTTCTTCATC
  AY294194  TTGCCCACAT CTGCCGAGAC GTAAATTACG GATGACTAAT CCGCAACCTA CACGCCAACG GTGCCTCCTT CTTCTTCATC
  AY294196  TCGCCCACAT CTGTCGAGAT GTAAACTACG GCTGACTAAT CCGAAACCTC CACGCCAACG GCGCCTCCTT CTTCTTCATC
  AY294195  TCGCCCACAT CTGTCGAGAT GTAAACTACG GCTGACTAAT CCGAAACCTC CACGCCAACG GCGCCTCCTT CTTCTTCATC
  AY294189  TCGCCCACAT CTGTCGAGAT GTAAACTACG GCTGACTAAT CCGAAACCTC CACGCCAACG GCGCCTCCTT CTTCTTCATC
  AY294191  TCGCCCACAT CTGTCGAGAT GTAAACTACG GCTGACTAAT CCGAAACCTC CACGCCAACG GCGCCTCCTT CTTCTTCATC
  AY294192  TCGCCCACAT CTGTCGAGAT GTAAACTACG GCTGACTAAT CCGAAACCTC CACGCCAACG GCGCCTCCTT CTTCTTCATC
  AY294193  TCGCCCACAT CTGTCGAGAT GTAAACTACG GCTGACTAAT CCGAAACCTC CACGCCAACG GCGCCTCCTT CTTCTTCATC
 Consensus  TtGCCCACAT CTGcCGaGAc GTAAAcTACG GaTGACTAAT CCGcAAcCTa CACGCCAACG GcGCCTCcTT CTTCTTCATc

            241                                                                                 320
  AY651959  TGCATCTACC TTCACATCGG CCGAGGCCTT TACTATGGTT CTTACCTATA CAAAGAAACA TGAAACATCG GAGTTGTTCT
  AY651958  TGCATCTACC TTCACATCGG CCGAGGCCTT TACTATGGTT CTTACCTATA CAAAGAAACA TGAAACATCG GAGTTGTTCT
  AY651957  TGCATCTACC TCCACATCGG CCGAGGCCTT TACTATGGTT CTTACCTCTA CAAAGAAACA TGAAACATTG GAGTTGTTCT
  AY294197  TGCATCTACC TCCACATCGG CCGAGGCCTT TACTATGGTT CTTACCTCTA CAAAGAAACA TGAAACATTG GAGTTGTTCT
  AY294194  TGCATCTACC TCCACATCGG CCGAGGCCTT TACTATGGTT CTTACCTCTA CAAAGAAACA TGAAACATTG GAGTTGTTCT
  AY294196  TGCATCTACC TCCACATCGG CCGAGGCCTT TACTACGGCT CCTACCTCTA CAAAGAAACA TGAAATATTG GAGTCGTTCT
  AY294195  TGCATCTACC TCCACATCGG CCGAGGCCTT TACTACGGCT CCTACCTCTA CAAAGAAACA TGAAATATTG GAGTCGTTCT
  AY294189  TGCATCTACC TCCACATCGG CCGAGGCCTT TACTACGGCT CCTACCTCTA CAAAGAAACA TGAAATATTG GAGTCGTTCT
  AY294191  TGCATCTACC TCCACATCGG CCGAGGCCTT TACTACGGCT CCTACCTCTA CAAAGAAACA TGAAATATTG GAGTCGTTCT
  AY294192  TGCATCTACC TCCACATCGG CCGAGGCCTT TACTACGGCT CCTACCTCTA CAAAGAAACA TGAAATATTG GAGTCGTTCT
  AY294193  TGCATCTACC TCCACATCGG CCGAGGCCTT TACTACGGCT CCTACCTCTA CAAAGAAACA TGAAATATTG GAGTCGTTCT
 Consensus  TGCATCTACC TcCACATCGG CCGAGGCCTT TACTAtGGtT CtTACCTcTA CAAAGAAACA TGAAAcATtG GAGTtGTTCT

            321                                                                         392
  AY651959  CCTCCTTCTA GTAATAGCAA CTGCCTTCGT GGGCTACGTT CTTCCCTGAG GACAAATATC ATTCTGAGGG GC
  AY651958  CCTCCTTCTA GTAATAGCAA CTGCCTTCGT GGGCTACGTT CTTCCCTGAG GACAAATATC ATTCTGAGGG GC
  AY651957  CCTCCTCCTA GTAATAGCAA CTGCCTTCGT AGGCTACGTC CTTCCCTGAG GACAAATGTC ATTCTGAGGG GC
  AY294197  CCTCCTTCTA GTAATAGCAA CTGCCTTCGT AGGCTACGTC CTTCCCTGAG GACAAATGTC ATTCTGAGGG GC
  AY294194  CCTCCTCCTA GTAATAGCAA CTGCCTTCGT AGGCTACGTC CTTCCCTGAG GACAAATGTC ATTCTGAGGG GC
  AY294196  ACTCCTCCTA GTTATGGCAA CCGCCTTCGT AGGCTACGTC CTGCCATGAG GACAAATATC TTTTTGAGGT GC
  AY294195  ACTCCTCCTA GTTATGGCAA CCGCCTTCGT AGGCTACGTC CTGCCATGAG GACAAATATC TTTTTGAGGT GC
  AY294189  ACTCCTCCTA GTTATGGCAA CCGCCTTCGT AGGCTACGTC CTGCCATGAG GACAAATATC TTTTTGAGGT GC
  AY294191  ACTCCTCCTA GTTATGGCAA CCGCCTTCGT AGGCTACGTC CTGCCATGAG GACAAATATC TTTTTGAGGT GC
  AY294192  ACTCCTCCTA GTTATGGCAA CCGCCTTCGT AGGCTACGTC CTGCCATGAG GACAAATATC TTTTTGAGGT GC
  AY294193  ACTCCTCCTA GTTATGGCAA CCGCCTTCGT AGGCTACGTC CTGCCATGAG GACAAATATC TTTTTGAGGT GC
 Consensus  cCTCCTcCTA GTaATaGCAA CtGCCTTCGT aGGCTACGTc CTtCCcTGAG GACAAATaTC aTTcTGAGGg GC

Referenz: Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890