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Xiphias gladius – Alignment
1 80 AY618351 AY319374 L11561 AF165087 CAAGAACCTT AATGGCTAAT CTCCGAAAAA CCCACCCCCT CCTAAAAATC GCAAACGACG CACTAGTGGA TCTCCCAACT Consensus .......... .......... .......... .......... .......... .......... .......... .......... 81 160 AY618351 AY319374 TCCTCA CAGGCCTGTT L11561 TCCTCA CAGGCCTGTT AF165087 CCCTCCAACA TTTCAGTCTG ATGAAACTTC GGCTCCCTCC TCGGCCTCTG TTTAGCTGCC CAAGTCCTCA CAGGCCTGTT Consensus .......... .......... .......... .......... .......... .......... ....tcctca caggcctgtt 161 240 AY618351 GCTATA CACTATACAT CAGACATCGC GACAGCCTTT ACATCCGTAG CACATATCTG CCGAAATGTA AATTATGGAT AY319374 TCTCGCTATA CACTATACAT CAGACATCGC GACGGCCTTT ACATCCGTAG CACATATCTG CCGAGATGTA AATTATGGAT L11561 TCTCGCTATA CACTATACAT CAGACATCGC GACRGCYTTT ACATCCGTAG CACATATCTG CCGAGATGTA AATTATGGAT AF165087 TCTCGCTATA CACTATACAT CAGACATCGC GACGGCCTTT ACATCCGTAG CACATATCTG CCGAGATGTA AATTATGGAT Consensus tctcGCTATA CACTATACAT CAGACATCGC GACgGCcTTT ACATCCGTAG CACATATCTG CCGAgATGTA AATTATGGAT 241 320 AY618351 GACTCATCCG AAACATGCAC GCCAACGGCG CATCCTTCTT CTACATCTGC ATTTACCTCC ACATTGGCCG AGGTCTTTAC AY319374 GACTCATCCG AAACATGCAC GCCAACGGCG CATCCTTCTT CTTCATCTGC ATTTACCTCC ACATTGGCCG AGGTCTTTAC L11561 GACTCATCCG AAACATGCRC GCCAACGGCG CATCCTTCTT CTTCATCTGC ATTTACCTCC ACATTGGCCG AGGTCTTTAC AF165087 GACTCATCCG AAACATGCAC GCCAACGGCG CATCCTTCTT CTTCATCTGC ATTTACCTCC ACATTGGCCG AGGTCTTTAC Consensus GACTCATCCG AAACATGCaC GCCAACGGCG CATCCTTCTT CTtCATCTGC ATTTACCTCC ACATTGGCCG AGGTCTTTAC 321 400 AY618351 TATGGCTCCT ATCTATACAA AGAAACATGG AATATTGGAG TTGTTCTCCT TCTCCTAGTA ATGATGACCG CTTTCGTAGG AY319374 TATGGCTCCT ATCTATACAA AGAAACATGG AATATTGGAG TTGTTCTCCT TCTCCTAGTA ATGATGACCG CTTTCGTAGG L11561 TATGGCTCCT ATCTATACAA AGAAACATGG AATATTGGAG TTGTTCTCCT TCTCCTAGTA ATGATGACCG CTTTCGTAGG AF165087 TATGGCTCCT ATCTATACAA AGAAACATGG AATATTGGAG TTGTTCTCCT TCTCCTAGTA ATGATGACCG CTTTCGTAGG Consensus TATGGCTCCT ATCTATACAA AGAAACATGG AATATTGGAG TTGTTCTCCT TCTCCTAGTA ATGATGACCG CTTTCGTAGG 401 439 AY618351 TTATGTATTA CCCTGAGGCC AAATATCTTT CTGAGGCGC AY319374 TTATGTATTA CCCTGAGGCC AAATATCTTT CTGAGGCGC L11561 TTATGTATTA CCCTGAGGCC AAATATCTTT CTGAGGCGC AF165087 TTATGTATTA CCC Consensus TTATGTATTA CCCtgaggcc aaatatcttt ctgaggcgc
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890