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- State: published
Perca fluviatilis – Alignment
1 80 AY374281 ATGGCAAG CCTCCGAAAA ACTCACCCCC TACTAAAAAT TGCAAACAAC GCACTAGTTG ACTTACCCGC AF546116 ATGGCAAG CCTCCGAAAA ACTCACCCCC TACTAAAAAT TGCAAACAAC GCACTAGTTG ACTTACCCGC AF546117 ATGGCAAG CCTCCGAAAA ACTCACCCCC TACTAAAAAT TGCAAACAAC GCACTAGTTG ACTTACCCGC AF366599 ATGGCAAG CCTCCGAAAA ACTCACCCCC TACTAAAAAT TGCAAACAAC GCACTAGTTG ACTTACCCGC AF045358 ATGGCAAG CCTCCGAAAA ACTCACCCCC TACTAAAAAT TGCAAACAAC GCACTAGTTG ACTTACCCGC AF165080 CAAAAACCTC TAATGGCAAG CCTCCGAAAA ACTCACCCCC TACTAAAAAT TGCAAACAAC GCACTAGTTG ACTTACCCGC Consensus .......... ..ATGGCAAG CCTCCGAAAA ACTCACCCCC TACTAAAAAT TGCAAACAAC GCACTAGTTG ACTTACCCGC 81 160 AY374281 CCCTTCTAAT ATTTCAGTAT GATGAAACTT TGGTTCCCTA CTTGGCCTCT GTTTAATTAC CCAAATCCTA ACTGGCCTTT AF546116 CCCTTCTAAT ATTTCAGTAT GATGAAACTT TGGTTCCCTA CTTGGCCTCT GTTTAATTAC CCAAATCCTA ACTGGCCTTT AF546117 CCCTTCTAAT ATTTCAGTAT GATGAAACTT TGGTTCCCTA CTTGGCCTCT GTTTAATTAC CCAAATCCTA ACTGGCCTTT AF366599 CCCTTCTAAT ATTTCAGTAT GATGAAACTT TGGTTCCCTA CTTGGCCTCT GTTTAATTAC CCAAATCCTA ACTGGCCTTT AF045358 CCCTTCTAAT ATTTCAGTAT GATGAAACTT TGGTTCCCTA CTTGGCCTCT GTTTAATTAC CCAAATCCTA ACTGGCCTTT AF165080 CCCTTCTAAT ATTTCAGTAT GATGAAACTT TGGTTCCCTA CTTGGCCTCT GTTTAATTAC CCAAATCCTA ACTGGCCTTT Consensus CCCTTCTAAT ATTTCAGTAT GATGAAACTT TGGTTCCCTA CTTGGCCTCT GTTTAATTAC CCAAATCCTA ACTGGCCTTT 161 240 AY374281 TTCTGGCAAT ACACTATACC GCAGACATTG CAACAGCCTT TTCATCAGTT GCCCACATTT GCCGAGACGT AAACTACGGC AF546116 TTCTGGCAAT ACACTATACC GCAGACATTG CAACAGCCTT TTCATCAGTT GCCCACATTT GCCGAGACGT AAACTACGGC AF546117 TTCTGGCAAT ACACTATACC GCAGACATCG CACCAGCCTT TTCATCAGTC GCCCACATTT GCCGACACGT AAACTACGGC AF366599 TTCTGGCAAT ACACTATACC GCAGACATCG CAACAGCCTT TTCATCAGTC GCCCACATTT GCCGAGACGT AAACTACGGC AF045358 TTCTGGCAAT ACACTATACC GCAGACATCG CAACAGCCTT TTCATCAGTC GCCCACATTT GCCGAGACGT AAACTACGGC AF165080 TTCTGGCAAT ACACTATACC GCAGACATCG CAACAGCCTT TTCATCAGTC GCCCACATTT GCCGAGACGT AAACTACGGC Consensus TTCTGGCAAT ACACTATACC GCAGACATcG CAaCAGCCTT TTCATCAGTc GCCCACATTT GCCGAgACGT AAACTACGGC 241 320 AY374281 TGACTCATTC GAAACATTCA TGCCAATGGT GCATCCTTCT TCTTTATTTG CATCTATATG CACATCGGCC GGGGTTTATA AF546116 TGACTCATTC GAAACATTCA TGCCAATGGT GCATCCTTCT TCTTTATTTG CATCTATATG CACATCGGCC GGGGTTTATA AF546117 TGACTCATTC GAAATATTCA TGCCAATGGT GCATCCTTCT TCTTTATTTG CATCTATATG CACATCGGCC GGGGTTTATA AF366599 TGACTCATTC GAAATATTCA TGCCAATGGT GCATCCTTCT TCTTTATTTG CATCTATATG CACATCGGCC GGGGTTTATA AF045358 TGACTCATTC GAAATATTCA TGCCAATGGT GCATCCTTCT TCTTTATTTG CATCTATATG CACATCGGCC GGGGTTTATA AF165080 TGACTCATTC GAAATATTCA TGCCAATGGT GCATCCTTCT TCTTTATTTG CATCTATATG CACATCGGCC GGGGTTTATA Consensus TGACTCATTC GAAAtATTCA TGCCAATGGT GCATCCTTCT TCTTTATTTG CATCTATATG CACATCGGCC GGGGTTTATA 321 400 AY374281 TTACGGCTCC TATCTTTACA AAGGAACATG AAACATTGGA GTTGTTCTCC TTCTTCTAGT AATAATAACC GCCTTTGTTG AF546116 TTACGGCTCC TATCTTTACA AAGGAACATG AAACATTGGA GTTGTTCTCC TTCTTCTAGT AATAATAACC GCCTTTGTTG AF546117 TTACGGCTCC TATCTTTACA AAGAAACATG AAACATTGGA GTTGTTCTCC TTCTCCTAGT AATAATAACC GCCTTTGTTG AF366599 TTACGGCTCC TATCTTTACA AAGAAACATG AAACATTGGA GTTGTTCTCC TTCTCCTAGT AATAATAACC GCCTTTGTTG AF045358 TTACGGCTCC TATCTTTACA AAGAAACATG AAACATTGGA GTTGTTCTCC TTCTCCTAGT AATAATAACC GCCTTTGTTG AF165080 TTACGGCTCC TATCTTTACA AAGAAACATG AAACATTGGA GTTGTTCTCC TTCTCCTAGT AATAATAACC GCMTTTGTTG Consensus TTACGGCTCC TATCTTTACA AAGaAACATG AAACATTGGA GTTGTTCTCC TTCTcCTAGT AATAATAACC GCcTTTGTTG 401 440 AY374281 GGTACGTCCT GCCCTGAGGA CAAATATCTT TCTGGGGTGC AF546116 GGTACGTCCT GCCCTGAGGA CAAATATCTT TCTGGGGTGC AF546117 GGTATGTCCT GCCCTGAGGA CAAATATCTT TCTGGGGTGC AF366599 GGTACGTCCT GCCCTGAGGA CAAATATCTT TCTGGGGTGC AF045358 GGTATGTCCT GCCCTGAGGA CAAATATCTT TCTGGGGTGC AF165080 GGTACGTCCT GCCC Consensus GGTAcGTCCT GCCCtgagga caaatatctt tctggggtgc
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890