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- State: published
Oncorhynchus masou – Alignment
1 80 D58403 ATGGCCAACC TCCGAAAAAC CCACCCACTC CTAAAAATCG CTAATGACGC ACTAGTCGAT CTACCAACAC CATCCAACAT AF125210 ATGGCCAACC TCCGAAAAAC CCACCCACTC CTAAAAATCG CTAATGACGC ACTAGTCGAT CTACCAACAC CATCCAACAT D58402 ATGGCCAACC TCCGAAAAAC CCACCCACTC CTAAAAATCG CTAATGACGC ACTAGTCGAT CTACCAACAC CATCCAACAT Consensus ATGGCCAACC TCCGAAAAAC CCACCCACTC CTAAAAATCG CTAATGACGC ACTAGTCGAT CTACCAACAC CATCCAACAT 81 160 D58403 CTCCGTCTGA TGAAACTTTG GCTCACTTTT AGGCCTATGT CTAGCCACCC AAATTCTTAC CGGACTCTTC CTAGCCATGC AF125210 CTCCGTCTGA TGAAACTTTG GCTCACTTTT AGGCCTATGT CTAGCCACCC AAATTCTTAC CGGACTCTTC TTAGCCATGC D58402 CTCCGTCTGA TGAAACTTTG GCTCACTTTT AGGCCTATGT CTAGCCACCC AAATTCTTAC CGGACTCTTC TTAGCCATGC Consensus CTCCGTCTGA TGAAACTTTG GCTCACTTTT AGGCCTATGT CTAGCCACCC AAATTCTTAC CGGACTCTTC tTAGCCATGC 161 240 D58403 ACTACACCTC AGATATTTCA ACAGCTTTTT CCTCTGTCTG CCACATCTGC CGAGATGTTA GTTACGGCTG ACTTATTCGA AF125210 ACTACACCTC AGATATTTCA ACAGCTTTTT CCTCTGTCTG CCACATCTGC CGAGATGTTA GTTACGGCTG ACTTATTCGA D58402 ACTACACCTC AGATATTTCA ACAGCTTTTT CCTCTGTCTG CCACATCTGC CGAGATGTTA GTTACGGCTG ACTTATTCGA Consensus ACTACACCTC AGATATTTCA ACAGCTTTTT CCTCTGTCTG CCACATCTGC CGAGATGTTA GTTACGGCTG ACTTATTCGA 241 320 D58403 AACATCCATG CCAACGGAGC ATCTTTCTTT TTTATTTGTA TTTATATACA TATCGCCCGG GGACTTTATT ATGGCTCATA AF125210 AACATCCATG CCAACGGAGC ATCTTTCTTT TTTATTTGTA TTTATATACA TATCGCCCGG GGACTTTATT ATGGCTCATA D58402 AATATCCATG CCAACGGAGC ATCTTTCTTT TTTATTTGTA TTTATATACA TATCGCCCGA GGACTTTATT ATGGCTCATA Consensus AAcATCCATG CCAACGGAGC ATCTTTCTTT TTTATTTGTA TTTATATACA TATCGCCCGg GGACTTTATT ATGGCTCATA 321 400 D58403 CCTTTACAAA GAAACCTGAA ATATCGGAGT TGTACTTTTA CTTCTCACTA TAATGACTGC ATTCGTAGGT TACGTCCTTC AF125210 CCTTTACAAA GAAACCTGAA ATATCGGAGT TGTACTTTTA CTTCTCACTA TAATGACTGC ATTCGTAGGT TACGTCCTTC D58402 CCTGTACAAA GAAACCTGAA ATATCGGAGT TGTACTTTTA CTTCTCACTA TAATGACTGC ATTCGTAGGT TACGTCCTTC Consensus CCTtTACAAA GAAACCTGAA ATATCGGAGT TGTACTTTTA CTTCTCACTA TAATGACTGC ATTCGTAGGT TACGTCCTTC 401 428 D58403 CATGAGGACA AATATCCTTC TGAGGAGC AF125210 CATGAGGACA AATATCCTTC TGAGGAGC D58402 CATGAGGACA AATATCCTTC TGAGGAGC Consensus CATGAGGACA AATATCCTTC TGAGGAGC
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890