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Oncorhynchus mykiss – Alignment
1 80 NC_001717 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CTCTCCTAAA AATCGCTAAT L29771 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CTCTCCTAAA AATCGCTAAT AY032632 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CTCTCCTAAA AATCGCTAAT AY032629 AAAAACCACC GTTGGTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CTCTCCTAAA AATCGCTAAT AY032631 AAAAACCACC GTTGGTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CTCTCCTAAA AATCGCTAAT AY032630 AAAAACCACC GTTGGTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CTCTCCTAAA AATCGCTAAT AJ314564 CCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CTCTCCTAAA AATCGCTAAT AY032633 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CACTCCTAAA AATCGCTAAT D58401 ATGGC CAACCTCCGA AAAACCCACC CTCTCCTAAA AATCGCTAAT AF125208 ATGGC CAACCTCCGA AAAACCCACC CTCTCCTAAA AATCGCTAAT AF125209 ATGGC CAACCTCCGA AAAACCCACC CTCTCCTAAA AATCGCTAAT AF172395 AF312563 GCTAAT AF312574 GCTAAT Consensus .......... .......... .......... .......... .......... .......... .......... ....gctaat 81 160 NC_001717 GACGCACTAG TCGACCTCCC AGCACCTTCT AATATCTCAG TCTGGTGAAA CTTTGGCTCA CTACTAGGCC TATGTTTAGC L29771 GACGCACTAG TCGACCTCCC AGCACCTTCT AATATCTCAG TCTGGTGAAA CTTTGGCTCA CTACTAGGCC TATGTTTAGC AY032632 GACGCACTAG TCGACCTCCC AGCACCTTCT AATATCTCAG TCTGATGAAA CTTTGGCTCA CTACTAGGCC TATGTTTAGC AY032629 GACGCACTAG TCGACCTCCC AGCACCTTCT AATATCTCAG TCTGATGAAA CTTTGGCTCA CTACTAGGCC TATGTTTAGC AY032631 GACGCACTAG TCGACCTCCC AGCACCTTCT AATATCTCAG TCTGATGAAA CTTTGGCTCA CTACTAGGCC TATGTTTAGC AY032630 GACGCACTAG TCGACCTCCC AGCACCTTCT AATATCTCAG TCTGATGAAA CTTTGGCTCA CTACTAGGCC TATGTTTAGC AJ314564 GACGCACTAG TCGACCTCCC AGCACCTTCT AATATCTCAG TCTGATGAAA CTTTGGCTCA CTACTAGGCC TATGTTTAGC AY032633 GACGCACTAG TCGACCTCCC AGCACCTTCT AACATCTCAG TCTGATGAAA CTTTGGCTCA CTCCTAGGCC TATGTTTAGC D58401 GACGCACTAG TCGACCTCCC AGCACCTTCT AATATCTCAG TCTGATGAAA CTTTGGCTCA CTACTAGGCC TATGTTTAGC AF125208 GACGCACTAG TCGACCTCCC AGCACCTTCT AATATCTCAG TCTGATGAAA CTTTGGCTCA CTACTAGGCC TATGTTTAGC AF125209 GACGCACTAG TCGACCTCCC AGCACCTTCT AATATCTCAG TCTGATGAAA CTTTGGCTCA CTACTAGGCC TATGTTTAGC AF172395 GGCTCA CTACTAGGCC TATGTTTAGC AF312563 GACGCACTAG TCGACCTCCC AGCACCTTCT AATATCTCAG TCTGATGAAA CTTTGGCTCA CTACTAGGCC TATGTTTAGC AF312574 GACGCACTAG TCGACCTCCC AGCACCTTCT AACATCTCAG TCTGATGAAA CTTTGGCTCA CTCCTAGGCC TATGTTTAGC Consensus gacgcactag tcgacctccc agcaccttct aatatctcag tctgatgaaa ctttGGCTCA CTaCTAGGCC TATGTTTAGC 161 240 NC_001717 TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCCTCT GTTTGCCACA L29771 TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCCTCT GTTTGCCACA AY032632 TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCCTCT GTTTGCCACA AY032629 TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCCTCT GTTTGCCACA AY032631 TCCCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCCTCT GTTTGCCACA AY032630 TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCCTCT GTTTGCCACA AJ314564 TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCCTCT GTTTGCCACA AY032633 TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCTGACA TTTCAACAGC TTTCTCCTCT GTCTGCCACA D58401 TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCCTCT GTTTGCCACA AF125208 TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCCTCT GTTTGCCACA AF125209 TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCCTCT GTTTGCCACA AF172395 TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCCTCT GTTTGCCACA AF312563 TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCCTCT GTTTGCCACA AF312574 TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCTTCT GTCTGCCACA Consensus TACCCAAATT CTTACCGGGC TCTTCCTAGC CATGCACTAT ACCTCCGACA TTTCAACAGC TTTCTCcTCT GTtTGCCACA 241 320 NC_001717 TCTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTTTTTAT CTGTATTTAT L29771 TCTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTTTTTAT CTGTATTTAT AY032632 TCTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTTTTTAT CTGTATTTAT AY032629 TCTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTTTTTAT CTGTATTTAT AY032631 TCTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTTTTTAT CTGTATTTAT AY032630 TCTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTTTTTAT CTGCATTTAT AJ314564 TCTGCCGAGA TGTTAGTTAC GGCTGGCTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTTTTTAT CTGTATTTAT AY032633 TCTGCCGAGA TGTCAGTTAC GGCTGGCTTA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTTTTTAT TTGTATTTAT D58401 TCTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTTTTTAT CTGTATTTAT AF125208 TCTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTTTTTAT CTGTATTTAT AF125209 TCTGCCGAGA TGTTAGTTAC GGCTGGCTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTTTTTAT CTGTATTTAT AF172395 TCTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTTTTTAT CTGTATTTAT AF312563 TCTGCCGAGA TGTTAGTTAC GGCTGACTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTTTTTAT CTGTATTTAT AF312574 TCTGCCGAGA TGTAAGTTAC GGCTGACTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTCTTTAT TTGTATTTAT Consensus TCTGCCGAGA TGTtAGTTAC GGCTGaCTCA TTCGAAACAT CCATGCCAAC GGAGCATCTT TCTTtTTTAT cTGTATTTAT 321 400 NC_001717 ATACATATCG CCCGAGGACT TTACTACGGC TCGTACCTCT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT L29771 ATACATATCG CCCGAGGACT TTACTACGGC TCGTACCTCT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT AY032632 ATACATATCG CCCGAGGACT TTACTACGGC TCGTACCTCT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT AY032629 ATACATATCG CCCGAGGACT TTACTACGGC TCGTACCTCT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT AY032631 ATACATATCG CCCGAGGACT TTACTACGGC TCGTACCTCT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT AY032630 ATACATATCG CCCGAGGACT TTACTACGGA TCGTACCTCT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT AJ314564 ATACATATCG CCCGAGGACT TTACTACGGC TCGTACCTCT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT AY032633 ATACATATCG CCCGAGGACT TTATTACGGC TCGTACCTGT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT D58401 ATACATATCG CCCGAGGACT TTACTACGGC TCGTACCTCT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT AF125208 ATACATATCG CCCGAGGACT TTACTACGGC TCGTACCTCT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT AF125209 ATACATATCG CCCGAGGACT TTACTACGGC TCGTACCTCT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT AF172395 ATACATATCG CCCGAGGACT TTACTACGGC TCGTACCTCT ACAAAGAAAC CTGGAATATC GGAGTTGTAC TTTTACTTCT AF312563 ATACATATCG CCCGAGGACT TTACTACGGC TCGTAC AF312574 ATACATATCG CCCGAGGACT TTACTATGGC TCATAA Consensus ATACATATCG CCCGAGGACT TTACTAcGGC TCgTAcctct acaaagaaac ctggaatatc ggagttgtac ttttacttct 401 463 NC_001717 CACTATAATA ACTGCCTTTG TAGGCTACGT CCTCCCGTGA GGACAAATAT CATTCTGAGG GGC L29771 CACTATAATA ACTGCCTTTG TAGGCTACGT CCTCCCGTGA GGACAAATAT CATTCTGAGG GGC AY032632 CACTATAATA ACTGCCTTTG TAGGCTACGT CCTCCCGTGA GGACAAATAT CATTCTGAGG GGC AY032629 CACTATAATA ACTGCCTTTG TAGGCTACGT CCTCCCGTGA GGACAAATAT CATTCTGAGG GGC AY032631 CACTATAATA ACTGCCTTTG TAGGCTACGT CCTCCCGTGA GGACAAATAT CATTCTGAGG GGC AY032630 CACTATAATA ACTGCCTTTG TAGGCTACGT CCTCCCGTGA GGACAAATAT CATTCTGAGG AGC AJ314564 CACTATAATA ACTGCCTTTG TAGGCTACGT CCTCCCGTGA GGACAAATAT CATTCTG-GG CAC AY032633 CACTATAATA ACTGCCTTTG TGGGCTACGT TCTCCCGTGA GGACAAATAT CGTTCTGAGG AGC D58401 CACTATAATA ACTGCCTTTG TAGGCTACGT CCTCCCGTGA GGACAAATAT CATTCTGAGG GGC AF125208 CACTATAATA ACTGCCTTTG TAGGCTACGT CCTCCCGTGA GGACAAATAT CATTCTGAGG GGC AF125209 CACTATAATA ACTGCCTTTG TAGGCTACGT CCTCCCGTGA GGACAAATAT CATTCTGAGG GGC AF172395 CACTATAATA ACTGCCTTTG TAGGCTACGT CCTC AF312563 AF312574 Consensus cactataata actgcctttg taggctacgt cctc...... .......... .......... ...
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890