Views
- State: published
Salvelinus fontinalis – Alignment
1 80 NC_000860 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CACTCCTAAA AATTGCTAAT AF154850 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTAATGGC CAACCTCCGA AAAACCCACC CACTCCTAAA AATTGCTAAT D58399 ATGGC CAACCTCCGA AAAACCCACC CACTCCTAAA AATTGCTAAT Consensus aaaaaccacc gttgttattc aactacaaga acctaATGGC CAACCTCCGA AAAACCCACC CACTCCTAAA AATTGCTAAT 81 160 NC_000860 GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCCTAGGCC TATGTTTAGC AF154850 GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCCTAGGCC TATGTTTAGC D58399 GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCCTAGGCC TATGTTTAGC Consensus GACGCACTAG TCGACCTCCC TGCCCCCTCT AATATCTCAG TCTGATGAAA CTTTGGTTCA CTCCTAGGCC TATGTTTAGC 161 240 NC_000860 CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCGACAGC TTTTTCCTCT GTATGCCACA AF154850 CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCGACAGC TTTTTCCTCT GTATGCCACA D58399 CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCGACAGC TTTTTCCTCT GTATGCCACA Consensus CACCCAAATT CTTACCGGAC TCTTCCTAGC CATACACTAC ACCTCCGATA TTTCGACAGC TTTTTCCTCT GTATGCCACA 241 320 NC_000860 TTTGTCGAGA TGTAAGTTAC GGCTGGCTCA TCCGAAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAT AF154850 TTTGTCGAGA TGTAAGTTAC GGCTGGCTCA TCCGAAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAT D58399 TTTGTCGAGA TGTAAGTTAC GGCTGGCTCA TCCGAAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAT Consensus TTTGTCGAGA TGTAAGTTAC GGCTGGCTCA TCCGAAATAT CCACGCTAAC GGAGCATCTT TCTTCTTTAT CTGTATTTAT 321 400 NC_000860 ATGCATATCG CCCGAGGACT ATACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGGGTAGTAT TATTACTTCT AF154850 ATGCATATCG CCCGAGGACT ATACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGGGTAGTAT TATTACTTCT D58399 ATGCATATCG CCCGAGGACT ATACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGGGTAGTAT TATTACTTCT Consensus ATGCATATCG CCCGAGGACT ATACTACGGG TCCTACCTAT ATAAAGAAAC CTGAAATATT GGGGTAGTAT TATTACTTCT 401 463 NC_000860 CACTATAATG ACAGCTTTTG TAGGCTACGT TCTCCCATGA GGGCAAATAT CCTTCTGAGG GGC AF154850 CACTATAATG ACAGCTTTTG TAGGCTACGT TCTCCCATGA GGGCAAATAT CCTTCTGAGG GGC D58399 CACTATAATG ACAGCTTTTG TAGGCTACGT TCTCCCATGA GGGCAAATAT CCTTCTGAGG GGC Consensus CACTATAATG ACAGCTTTTG TAGGCTACGT TCTCCCATGA GGGCAAATAT CCTTCTGAGG GGC
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890