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Theragra chalcogramma – Alignment
1 80 NC_004449 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAGCCTTCG GAAAACCCAT CCAATCCTAA AAATTGCTAA AB094071 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAGCCTTCG GAAAACCCAT CCAATCCTAA AAATTGCTAA AB182308 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAGCCTTCG GAAAACCCAT CCAATCCTAA AAATTGCTAA AB182307 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAGCCTTCG GAAAACCCAT CCAATCCTAA AAATTGCTAA AB182304 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAGCCTTCG GAAAACCCAT CCAATCCTAA AAATTGCTAA AB182303 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAGCCTTCG GAAAACCCAT CCAATCCTAA AAATTGCTAA AB182302 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAGCCTTCG GAAAACCCAT CCAATCCTAA AAATTGCTAA AB182301 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAGCCTTCG GAAAACCCAT CCAATCCTAA AAATTGCTAA AB182300 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAGCCTTCG GAAAACCCAT CCAATCCTAA AAATTGCTAA AB182306 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAGCCTTCG GAAAACCCAT CCAATCCTAA AAATTGCTAA AB182305 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAGCCTTCG GAAAACCCAT CCAATCCTAA AAATTGCTAA AB078151 ATGG CCAGCCTTCG GAAAACCCAT CCAATCCTAA AAATTGCTAA AF081685 ATGG CCAGCCTTCG GAAAACCCAT CCAATCCTAA AAATTGCTAA AY237810 Consensus .......... .......... .......... ......atgg ccagccttcg gaaaacccat ccaatcctaa aaattgctaa 81 160 NC_004449 TAGCGCATTA GTTGATCTCC CCGCCCCCTC CAATATTTCA GTATGATGAA ATTTCGGCTC TCTTCTAGGC CTTTGCTTAA AB094071 TAGCGCATTA GTTGATCTCC CCGCCCCCTC CAATATTTCA GTATGATGAA ATTTCGGCTC TCTTCTAGGC CTTTGCTTAA AB182308 TAGCGCATTA GTTGATCTCC CCGCCCCCTC CAATATTTCA GTATGATGAA ATTTCGGCTC TCTTCTAGGC CTTTGCTTAA AB182307 TAGCGCATTA GTTGATCTCC CCGCCCCCTC CAATATTTCA GTATGATGAA ATTTCGGCTC TCTTCTAGGC CTTTGCTTAA AB182304 TAGCGCATTA GTTGATCTCC CCGCCCCCTC CAATATTTCA GTATGATGAA ATTTCGGCTC TCTTCTAGGC CTTTGCTTAA AB182303 TAGCGCATTA GTTGATCTCC CCGCCCCCTC CAATATTTCA GTATGATGAA ATTTCGGCTC TCTTCTAGGC CTTTGCTTAA AB182302 TAGCGCATTA GTTGATCTCC CCGCCCCCTC CAATATTTCA GTATGATGAA ATTTCGGCTC TCTTCTAGGC CTTTGCTTAA AB182301 TAGCGCATTA GTTGATCTCC CCGCCCCCTC CAATATTTCA GTATGATGAA ATTTCGGCTC TCTTCTAGGC CTTTGCTTAA AB182300 TAGCGCATTA GTTGATCTCC CCGCCCCCTC CAATATTTCA GTATGATGAA ATTTCGGCTC TCTTCTAGGC CTTTGCTTAA AB182306 TAGCGCATTA GTTGATCTCC CCGCCCCCTC CAATATTTCA GTATGATGAA ATTTCGGCTC TCTTCTAGGC CTTTGCTTAA AB182305 TAGCGCATTA GTTGATCTCC CCGCCCCCTC CAATATTTCA GTATGATGAA ATTTCAGCTC TCTTCTAGGC CTTTGCTTAA AB078151 TAGCGCATTA GTTGATCTCC CCGCCCCCTC CAATATTTCA GTATGATGAA ATTTCGGCTC TCTTCTAGGC CTTTGCTTAA AF081685 TAGCGCATTA GTTGATCTCC CCGCCCCCTC CAATATTTCA GTATGATGAA ATTTCGGCTC TCTTCTAGGC CTTTGCTTAA AY237810 ATTTCGGCTC TCTTCTGGGC CTTTGCTTAA Consensus tagcgcatta gttgatctcc ccgccccctc caatatttca gtatgatgaa ATTTCGGCTC TCTTCTaGGC CTTTGCTTAA 161 240 NC_004449 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACAG CCTTCTCATC CGTAGTTCAC AB094071 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACAG CCTTCTCATC CGTAGTTCAC AB182308 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACGG CCTTCTCATC CGTAGTTCAC AB182307 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACGG CCTTCTCATC CGTAGTTCAC AB182304 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACGG CCTTCTCATC CGTAGTTCAC AB182303 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACGG CCTTCTCATC CGTAGTTCAC AB182302 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACGG CCTTCTCATC CGTAGTTCAC AB182301 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACGG CCTTCTCATC CGTAGTTCAC AB182300 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACGG CCTTCTCATC CGTAGTTCAC AB182306 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACAG CCTTCTCATC CGTAGTTCAC AB182305 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACGG CCTTCTCATC CGTAGTTCAC AB078151 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACGG CCTTCTCATC CGTAGTTCAC AF081685 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACAG CCTTCTCATC CGTAGTTCAC AY237810 TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACAG CCTTCTCATC CGTAGTTCAC Consensus TTACTCAACT TCTAACAGGA CTATTTCTAG CCATACACTA TACCTCAGAT ATCGAAACaG CCTTCTCATC CGTAGTTCAC 241 320 NC_004449 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGAAATA TACATGCTAA CGGTGCCTCT TTCTTTTTCA TTTGTCTTTA AB094071 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGAAATA TACATGCTAA CGGTGCCTCT TTCTTTTTCA TTTGTCTTTA AB182308 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGGAACA TACATGCTAA TGGTGCCTCT TTCTTTTTCA TTTGTCTTTA AB182307 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGGAATA TACATGCTAA TGGTGCCTCT TTCTTTTTCA TTTGTCTTTA AB182304 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGGAATA TACATGCTAA TGGTGCCTCT TTCTTTTTCA TTTGTCTTTA AB182303 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGGAATA TACATGCTAA TGGTGCCTCT TTCTTTTTCA TTTGTCTTTA AB182302 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGGAATA TACATGCTAA TGGTGCCTCT TTCTTTTTCA TTTGTCTTTA AB182301 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGGAATA TACATGCTAA TGGTGCCTCT TTCTTTTTCA TTTGTCTTTA AB182300 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGGAATA TACATGCTAA TGGTGCCTCT TTCTTTTTCA TTTGTCTTTA AB182306 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGGAATA TACATGCTAA TGGTGCCTCT TTCTTTTTCA TTTGTCTTTA AB182305 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGGAATA TACATGCTAA TGGTGCCTCT TTCTTTTTCA TTTGTCTTTA AB078151 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGGAATA TACATGCTAA TGGTGCCTCT TTCTTTTTCA TTTGTCTTTA AF081685 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGGAATA TACATGCTAA TGGTGCCTCT TTCTTTTTCA TTTGCCTTTA AY237810 ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGGAATA TACATGCTAA TGGTGCCTCT TTCTTTTTCA TTTGTCTTTA Consensus ATCTGTCGTG ATGTAAATTA CGGCTGACTA ATTCGGAATA TACATGCTAA TGGTGCCTCT TTCTTTTTCA TTTGtCTTTA 321 400 NC_004449 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT AB094071 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT AB182308 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT AB182307 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT AB182304 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT AB182303 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT AB182302 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT AB182301 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT AB182300 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT AB182306 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT AB182305 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT AB078151 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT AF081685 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT AY237810 CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT Consensus CATGCATATT GCCCGAGGTC TCTATTACGG CTCTTATCTT TTTGTAGAGA CATGAAACAT CGGAGTTGTT CTTTTCCTTT 401 464 NC_004449 TAGTAATAAT GACCTCTTTC GTAGGTTACG TTCTTCCCTG AGGACAAATA TCATTCTGAG GAGC AB094071 TAGTAATAAT GACCTCTTTC GTAGGTTACG TTCTTCCCTG AGGACAAATA TCATTCTGAG GAGC AB182308 TAGTAATAAT GACCTCTTTC GTAGGTTACG TTCTTCCCTG AGGACAAATA TCATTCTGAG GAGC AB182307 TAGTAATAAT GACCTCTTTC GTAGGTTACG TTCTTCCCTG AGGACAAATA TCATTCTGAG GAGC AB182304 TAGTAATAAT GACCTCTTTC GTAGGTTACG TTCTTCCCTG AGGACAAATA TCATTCTGAG GAGC AB182303 TAGTAATAAT GACCTCTTTC GTAGGTTACG TTCTTCCCTG AGGACAAATA TCATTCTGAG GAGC AB182302 TAGTAATAAT GACCTCTTTC GTAGGTTACG TTCTTCCCTG AGGACAAATA TCATTCTGAG GAGC AB182301 TAGTAATAAT GACCTCTTTC GTAGGTTACG TTCTTCCCTG AGGACAAATA TCATTCTGAG GAGC AB182300 TAGTAATAAT GACCTCTTTC GTAGGTTACG TTCTTCCCTG AGGACAAATA TCATTCTGGG GAGC AB182306 TAGTAATAAT GACCTCTTTC GTAGGTTACG TTCTTCCCTG AGGACAAATA TCATTCTGAG GAGC AB182305 TAGTAATAAT GACCTCTTTC GTAGGTTACG TTCTTCCCTG AGGACAAATA TCATTCTGAG GAGC AB078151 TAGTAATAAT GACCTCTTTC GTAGGTTACG TTCTTCCCTG AGGACAAATA TCATTCTGAG GAGC AF081685 TAGTAATAAT GACCTCTTTC GTAGGTTACG TCCTCCC AY237810 TAGTAATAAT GACCTCTTTC GTAGGTTACG TTCTTCC Consensus TAGTAATAAT GACCTCTTTC GTAGGTTACG TtCTtCC... .......... .......... ....
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890