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Melanogrammus aeglefinus – Alignment
1 80 AF165075 AAAAACCACC GTTGTTATTC AACTACAAGA ACTTTAATGG CCAGCCTTCG GAAAACTCAT CCAATCCTAA AAATTGCTAA AF081687 ATGG CCAGCCTCCG GAAAACTCAT CCAATCCTAA AAATTGCTAA AY237809 U04677 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 81 160 AF165075 TGATGCACTT GTTGATCTTC CCACTCCCTC CAATATTTCA GTATGATGAA ATTTTGGTTC TCTTCTAGGT CTTTGTCTAA AF081687 TGATGCATTC GTTGATCTTC CCACTCCCTC CAATATTTCA GTATGATGAA ATTTCGGCTC TCTTCTAGGT CTCTGTCTAA AY237809 TTTTGGTTC TCTTCTAGGT CTTTGTCTAA U04677 TCTAGGT CTTTGTCTAA Consensus .......... .......... .......... .......... .......... .ttt.gg.tc tctTCTAGGT CTtTGTCTAA 161 240 AF165075 TTACTCAACT TATGACAGGT CTATTTTTAG CCATGCACTA TACTTCAGAC ATTGAAACAG CCTTTTCATC CGTAGTTCAT AF081687 TTCCTCAACT TCTGACAGGT CTATTCTTAG CCATGCACTA TACTTCAGAC ATTGAAACAG CCTTCTCATC CGTAGCTCAT AY237809 TTACTCAACT TATGACAGGT CTATTTTTAG CCATGCACTA TACTTCAGAC ATTGAAACAG CCTTTTCATC CGTAGTTCAT U04677 TTACTCAACT TATGACAGGT CTATTTTTAG CCATGCACTA TACTTCAGAC ATTGAAACAG CCTTTTCATC CGTAGTTCAT Consensus TTaCTCAACT TaTGACAGGT CTATTtTTAG CCATGCACTA TACTTCAGAC ATTGAAACAG CCTTtTCATC CGTAGtTCAT 241 320 AF165075 ATCTGTCGTG ATGTAAACTA CGGCTGACTA ATCCGAAATA TACATGCTAA CGGCGCTTCT TTCTTCTTTA TCTGTCTTTA AF081687 ATCTGTCGTG ATGTCAACTA CGGCTGACTA ATCCGAAATA TACATGCTAA CGGTGCTTCT ATCTTCTTTA TCTGTCTATA AY237809 ATCTGTCGTG ATGTAAACTA CGGCTGACTA ATCCGAAATA TACATGCTAA CGGCGCTTCT TTCTTCTTTA TCTGTCTTTA U04677 ATCTGTCGTG ATGTAAACTA CGGGTGACTA ATCCGAAATA TACATGCTAA CGGCGCTTCT TTCTTCTTTA TCTGTTTTAT Consensus ATCTGTCGTG ATGTaAACTA CGGcTGACTA ATCCGAAATA TACATGCTAA CGGcGCTTCT tTCTTCTTTA TCTGTcTtta 321 400 AF165075 TATACATATT GCCCGAGGTC TTTATTATGG TTCCTATCTT TTTGTAGAAA CGTGAAACAT CGGGGTTGTC CTTTTCCTTT AF081687 TATACATATT GGCCGAGGGC TTTATTATGG TTCCTATCTT TTTGTAGAAA CGTGAAACAT CGGGGTTGTC CTTCTCCTTT AY237809 TATACATATT GCCCGAGGTC TTTATTATGG TTCCTATCTT TTTGTAGAAA CGTGAAACAT CGGGGTTGTC CTTTTCCTTT U04677 ANTACATATT GCCCGAGGTC TTTATTATGG TTCCTATCTT TTTGTAGAAA CGTGAAACAT CGGGGTTGTC CTTTTNNNNN Consensus taTACATATT GcCCGAGGtC TTTATTATGG TTCCTATCTT TTTGTAGAAA CGTGAAACAT CGGGGTTGTC CTTtTccttt 401 464 AF165075 TGGTAATAAT AACCTCTTTC GTAGGCTACG TTCTTCCCTG AGGCCAAATA TCATTCTGAG GAGC AF081687 TGGTAATAAT AACCTCTTTC GTAGGCTACG TCCTCCC AY237809 TGGTAATAAT AACCTCTTTC GTAGGCTACG TTCTTCCC U04677 NNNTAATAAT AACCTCTTTC GTAGGCTAC Consensus tggTAATAAT AACCTCTTTC GTAGGCTACg t.ct.cc... .......... .......... ....
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890