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- State: published
Lutjanus campechanus – Alignment
1 80 AY374294 AAAAACCACC CATTACTAAA AATTGCTAAC GACGCTCTAG TTGACCTTCC CGCACCCTCC AATATTTCAG TATGATGAAA AY294190 ATTGCTAAC GACGCTCTAG TTGACCTTCC CGCACCCTCC AATATTTCAG TATGATGAAA AY294203 ATTGCTAAC GACGCTCTAG TTGACCTTCC CGCACCCTCC AATATTTCAG TATGATGAAA AY294201 ATTGCTAAC GACGCTCTAG TTGACCTTCC CGCACCCTCC AATATTTCAG TATGATGAAA AY294205 ATTGCTAAC GACGCTCTAG TTGACCTTCC CGCACCCTCC AATATTTCAG TATGATGAAA AY294199 ATTGCTAAC GACGCTCTAG TTGACCTTCC CGCACCCTCC AATATTTCAG TATGATGAAA AF239681 AF239680 AF239677 AF239678 Consensus ......... .......... .......... .......... .......... .......... 81 160 AY374294 CTTTGGCTCC CTACTTGGCC TTTGCTTAAT TGCCCAAATT CTAACAGGAC TTTTCCTCGC CATACATTAC ACCTCCGACA AY294190 CTTTGGCTCC CTACTTGGCC TTTGCTTAAT TGCCCAAATT CTAACAGGAC TTTTCCTCGC CATACATTAC ACCTCCGACA AY294203 CTTTGGCTCC CTACTTGGCC TTTGCTTAAT TGCCCAAATT CTAACAGGAC TTTTCCTCGC CATACACTAC ACCTCCGACA AY294201 CTTTGGCTCC CTACTTGGCC TTTGCTTAAT TGCCCAAATT CTAACAGGAC TTTTCCTCGC CATACATTAC ACCTCCGACA AY294205 CTTTGGCTCC CTACTTGGCC TTTGCTTAAT TGCCCAAATT CTAACANGAC TTTTCCTCNC CTWRCATTAC ACCTCCGACA AY294199 CTTTGGCTCC CTACTTGGCC TTTGCTTAAT TGCCCAAATT CTAACAGGAC TTTTCCTCNN NATACATTAC ACCTCCGACA AF239681 AF239680 AF239677 AF239678 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 161 240 AY374294 TCACAATAGC CTTCTCATCA GTCGCCCACA TCTGCCGAGA TGTAAATTAC GGATGGCTAA TCCGCAACCT CCATGCCAAT AY294190 TCACAATAGC CTTCTCATCA GTCGCCCACA TCTGCCGAGA TGTAAATTAC GGATGGCTAA TCCGCAACCT CCATGCCAAT AY294203 TCACAATAGC CTTCTCATCA GTCGCCCACA TCTGCCGAGA TGTAAATTAC GGATGGCTAA TCCGCAACCT CCATGCCAAT AY294201 TCACAATAGC CTTCTCATCA GTCGCCCACA TCTGCCGAGA TGTAAATTAC GGATGGCTAA TCCGCAACCT CCATGCCAAT AY294205 TCACAATAGC CTTCTCATCA GTCGCCCACA TCTGCCGAGA TGTAAATTAC GGATGGCTAA TCCGCAACCT CCATGCCAAT AY294199 TCACAATAGC CTTCTCATCA GTCGCCCACA TCTGCCGAGA TGTAAATTAC GGATGGCTAA TCCGCAACCT CCATGCCAAT AF239681 AF239680 AF239677 AF239678 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 241 320 AY374294 GGTGCCTCCT TCTTCTTCAT CTGCATCTAC CTCCACATCG GCCGAGGTCT TTACTATGGC TCCTACCTCT ATAAAGAAAC AY294190 GGTGCCTCCT TCTTCTTCAT CTGCATCTAC CTCCACATCG GCCGAGGTCT TTACTATGGC TCCTACCTCT ATAAAGAAAC AY294203 GGCGCCTCCT TCTTCTTCAT CTGCATCTAC CTCCACATCG GCCGAGGTCT TTACTATGGC TCCTACCTCT ATAAAGAAAC AY294201 GGCGCCTCCT TCTTCTTCAT CTGCATCTAC CTCCACATCG GCCGAGGTCT TTACTATGGC TCCTACCTCT ATAAAGAAAC AY294205 GGCGCCTCCT TCTTCTTCAT CTGCATCTAC CTCCACATCG GCCGAGGTCT TTACTATGGC TCCTACCTCT ATAAAGAAAC AY294199 GGCGCCTCCT TCTTCTTCAT CTGCATCTAC CTCCACATCG GCCGAGGTCT TTACTATGGC TCCTACCTCT ATAAAGAAAC AF239681 AF239680 AF239677 AF239678 Consensus .......... .......... .......... .......... .......... .......... .......... .......... 321 400 AY374294 ATGAAACATT GGAGTTGTTC TCCTCCTCCT AGTGATAGCG ACTGCCTTCG TGGGCTACGT CCTTCCCTGA GGCCAAATGT AY294190 ATGAAACATT GGAGTTGTTC TCCTCCTCCT AGTGATAGCG ACTGCCTTCG TAGGCTACGT CCTTCCCTGA GGCCAAATGT AY294203 ATGAAACATT GGAGTTGTTC TCCTCCTCCT AGTGATAGCG ACTGCCTTCG TAGGCTACGT CCTTCCCTGA GGCCAAATGT AY294201 ATGAAACATT GGAGTTGTTC TCCTCCTCCT AGTGATAGCG ACTGCCTTCG TAGGCTACGT CCTTCCCTGA GGCCAAATGT AY294205 ATGAAACATT GGAGTTGTTC TCCTCCTCCT AGTGATAGCG ACTGCCTTCG TAGGCTACGT CCTTCCCTGA GGCCAAATGT AY294199 ATGAAACATT GGAGTTGTTC TCCTCCTCCT AGTGATAGCG ACTGCCTTCG TAGGCTACGT CCTTCCCTGA GGCCAAATGT AF239681 TGTTC TCCTCCTCCT AGTGATAACG ACTGCCTTCG TAGGCTACGT CCTTCCCTGA GGCCAAATGT AF239680 TGTTC TCCTCCTCCT AGTGATAACG ACTGCCTTCG TAGGCTACGT CCTTCCCTGA GGCCAAATGT AF239677 TGTTC TCCTCCTCCT AGTGATAACG ACTGCCTTCG TAGGCTACGT CCTTCCCTGA GGCCAAATGT AF239678 TGTTC TCCTCCTCCT AGTGATAACG ACTGCCTTCG TAGGCTACGT CCTTCCCTGA GGCCAAATGT Consensus .......... .....TGTTC TCCTCCTCCT AGTGATAaCG ACTGCCTTCG TAGGCTACGT CCTTCCCTGA GGCCAAATGT 401 413 AY374294 CATTCTGAGG AGC AY294190 CATTCTGAGG AGC AY294203 CATTCTGAGG AGC AY294201 CATTCTGAGG AGC AY294205 CATTCTGAGG AGC AY294199 CATTCTGAGG AGC AF239681 CATTCTGAGG AGC AF239680 CATTCTGAGG AGC AF239677 CATTCTGAGG AGC AF239678 CATTCCGAGG AGC Consensus CATTCtGAGG AGC
Referenz:
Multiple sequence alignment with hierarchical clustering F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890