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Salmo salar – Alignment
1 80 X76253 U12143 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAACCTCCG AAAAACTCAC CCGCTCCTAA AAATTGCTAA NC_001960 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAACCTCCG AAAAACTCAC CCGCTCCTAA AAATTGCTAA AF133701 AAAAACCACC GTTGTTATTC AACTACAAGA ACCTTAATGG CCAACCTCCG AAAAACTCAC CCGCTCCTAA AAATTGCTAA AJ314567 CC GTTGTTATTC AACTACAAGA ACCT-AATGG CCAACCTCCG AAAAACTCAC CCGCTCCTAA AAATTGCTAA AF165083 CAAGA ACCTTAATGG CCAACCTCCG AAAAACTCAC CCGCTCCTAA AAATTGCTAA AF202032 ATGG CCAACCTCCG AAAAACTCAC CCGCTCCTAA AAATTGCTAA AF053591 ATGG CCAACCTCCG AAAAACTCAC CCGCTCCTAA AAATTGCTAA X77525 CG AAAAACTCAC CCCCTCCTAA AAATTGCTAA Consensus .......... .......... .......... .......... ........cg aaaaactcac cc.ctcctaa aaattgctaa 81 160 X76253 CCTTGGCTC ACTCTTAGGC CTATGTCTAG U12143 TGACGCACTA GTCGATCTCC CAGCACCATC TAACATCTCA GTTTGATGAA ACTTTGGCTC ACTCTTAGGC CTATGTCTAG NC_001960 TGACGCACTA GTCGATCTCC CAGCACCATC TAACATCTCA GTTTGATGAA ACTTTGGCTC ACTCTTAGGC CTATGTCTAG AF133701 TGACGCACTA GTCGATCTCC CAGCACCATC TAACATCTCA GTTTGATGAA ACTTTGGCTC ACTCTTAGGC CTATGTCTAG AJ314567 TGACGCACTA GTCGATCTCC CAGCACCATC TAACATCTCA GTTTGATGAA ACTTTGGCTC ACTCTTAGGC CTATGTCTAG AF165083 TGACGCACTA GTCGATCTCC CAGCACCATC TAACATCTCA GTTTGATGAA ACTTTGGCTC ACTCTTAGGC CTATGTCTAG AF202032 TGACGCACTA GTCGATCTCC CAGCACCATC TAACATCTCA GTTTGATGAA ACTTTGGCTC ACTATTAGGC CTATGTCTAG AF053591 TGACGCACTA GTCGATCTCC CAGCACCATC TAACATCTCA GTTTGATGAA ACTTTGGCTC ACTATTAGGC CTATGTCTAG X77525 TGACGCACTA GTCGATCTCC CAGCACCATC TAACATCTCA GTTTGATGAA ACTTTGGCTC ACTCTTAGGC CTATGTCTAG Consensus tgacgcacta gtcgatctcc cagcaccatc taacatctca gtttgatgaa aCtTTGGCTC ACTcTTAGGC CTATGTCTAG 161 240 X76253 CCACCCAAAT CCTTACCGGG CTCTTCCTAG CCATACACTA CACCTCCGAT ATCTCAACAG CTTTTTCCTC TGTTTGCCAC U12143 CCACCCAAAT CCTTACCGGG CTCTTCCTAG CCATACACTA CACCTCCGAT ATCTCAACAG CTTTTTCCTC TGTTTGCCAC NC_001960 CCACCCAAAT CCTTACCGGG CTCTTCCTAG CCATACACTA CACCTCCGAT ATCTCAACAG CTTTTTCCTC TGTTTGCCAC AF133701 CCACCCAAAT CCTTACCGGG CTCTTCCTAG CCATACACTA CACCTCCGAT ATCTCAACAG CTTTTTCCTC TGTTTGCCAC AJ314567 CCACCCAAAT CCTTACCGGG CTCTTCCTAG CCATACACTA CACCTCCGAT ATCTCAACAG CTTTTTCCTC TGTTTGCCAC AF165083 CCACCCAAAT CCTTACCGGG CTCTTCCTAG CCATACACTA CACCTCCGAT ATCTCAACAG CTTTTTCCTC TGTTTGCCAC AF202032 CCACCCAAAT CCTTACCGGG CTCTTCCTAG CCATACACTA CACCTCCGAT ATCTCAACAG CTTTTTCCTC TGTTTGCCAC AF053591 CCACCCAAAT CCTTACCGGG CTCTTCCTAG CCATACACTA CACCTCCGAT ATCTCAACAG CTTTTTCCTC TGTTTGCCAC X77525 CCACCCAAAT CCTTACCGGG CTCTTCCTAG CCATACACTA CACCTCCGAT ATCTCAACAG CTTTTTCCTC TGTTTGCCAC Consensus CCACCCAAAT CCTTACCGGG CTCTTCCTAG CCATACACTA CACCTCCGAT ATCTCAACAG CTTTTTCCTC TGTTTGCCAC 241 320 X76253 ATTTGCCGAG ATGTTAGCTA TGGCTGACTC ATCCGTAACA TTCACGCTAA CGGAGCATCT TTCTTCTTTA TCTGTATTTA U12143 ATTTGCCGAG ATGTTAGCTA TGGCTGACTC ATCCGTAACA TTCACGCTAA CGGAGCATCT TTCTTCTTTA TCTGTATTTA NC_001960 ATTTGCCGAG ATGTTAGCTA TGGCTGACTC ATCCGTAACA TTCACGCTAA CGGAGCATCT TTCTTCTTTA TCTGTATTTA AF133701 ATTTGCCGAG ATGTTAGCTA TGGCTGACTC ATCCGTAACA TTCACGCTAA CGGAGCATCT TTCTTCTTTA TCTGTATTTA AJ314567 ATTTGCCGAG ATGTTAGCTA TGGCTGACTC ATCCGTAACA TTCACGCTAA CGGAGCATCT TTCTTCTTTA TCTGTATTTA AF165083 ATTTGCCGAG ATGTTAGCTA TGGCTGACTC ATCCGTAACA TTCACGCTAA CGGAGCATCT TTCTTCTTTA TCTGTATTTA AF202032 ATTTGCCGAG ATGTTAGCTA TGGCTGACTC ATCCGTAACA TTCACGCTAA CGGAGCATCT TTCTTCTTTA TCTGTATTTA AF053591 ATTTGCCGAG ATGTTAGCTA TGGCTGACTC ATCCGTAACA TTCACGCTAA CGGAGCATCT TTCTTCTTTA TCTGTATTTA X77525 ATTTGCCGAG ATGTTAGCTA TGGCTGACTC ATCCGTAACA TTCACGCTAA CGGAGCA Consensus ATTTGCCGAG ATGTTAGCTA TGGCTGACTC ATCCGTAACA TTCACGCTAA CGGAGCAtct ttcttcttta tctgtattta 321 400 X76253 TATACACATC GCCCGAGGAC TTTATTATGG TTCCTATCTA TATAAAGAAA CCTGAAATAT CGGAGTTGTA CTTCTACTTC U12143 TATACACATC GCCCGAGGAC TTTATTATGG TTCCTATCTA TATAAAGAAA CCTGAAATAT CGGAGTTGTA CTTCTACTTC NC_001960 TATACACATC GCCCGAGGAC TTTATTATGG TTCCTATCTA TATAAAGAAA CCTGAAATAT CGGAGTTGTA CTTCTACTTC AF133701 TATACACATC GCCCGAGGAC TTTATTATGG TTCCTATCTA TATAAAGAAA CCTGAAATAT CGGAGTTGTA CTTCTACTTC AJ314567 TATACACATC GCCCGAGGAC TTTATTATGG TTCCTATCTA TATAAAGAAA CCTGAAATAT CGGAGTTGTA CTTCTACTTC AF165083 TATACACATC GCCCGAGGAC TTTATTATGG TTCCTATCTA TATAAAGAAA CCTGAAATAT CGGAGTTGTA CTTCTACTTC AF202032 TATACACATC GCCCGAGGAC TTTATTATGG TTCCTATCTA TATAAAGAAA CCTGAAATAT CGGAGTTGTA CTTCTACTTC AF053591 TATACACATC GCCCGAGGAC TTTATTATGG TTCCTATCTA TATAAAGAAA CCTGAAATAT CGGAGTTGTA CTTCTATGAG X77525 Consensus tatacacatc gcccgaggac tttattatgg ttcctatcta tataaagaaa cctgaaatat cggagttgta cttctacttc 401 464 X76253 TCACTATAAT AACTGCCTTC GTAGGC U12143 TCACTATAAT AACTGCCTTC GTAGGCTACG TTCTTCCATG AGGACAAATA TCCTTCTGAG GAGC NC_001960 TCACTATAAT AACTGCCTTC GTAGGCTACG TTCTTCCATG AGGACAAATA TCCTTCTGAG GAGC AF133701 TCACTATAAT AACTGCCTTC GTAGGCTACG TTCTTCCATG AGGACAAATA TCCTTCTGAG GAGC AJ314567 TCACTATAAT AACTGCCTTC GTAGGCTACG TTCTTCCATG AGGACAAATY TCATTCTG-G ACG AF165083 TCACTATAAT AACTGCCTTC GTAGGCTACG TTCTTCCATG AGGACAAATA TCCTTCTGAG GAGC AF202032 TCACTATAAT AACTGCCTTC GTAGGCTACG TTCTTCCATG AGGACAAATA TCCTTCTGAG GAGC AF053591 GAGC X77525 Consensus tcactataat aactgccttc gtaggc.... .......... .......... .......... ....
Referenz:
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890